plotSingleTIC: plotSingleTIC

In Zhiqiang-PANG/OptiLCMS_web: Optimized LC-MS Spectra Processing

Description

plotSingleTIC is used to plot the TIC of a certain spectra

Usage

plotSingleTIC(
  mSet = NULL,
  filename,
  imagename,
  dpi = 72,
  width = 7,
  format = "png"
)

Arguments

mSet	mSet Object, should be processed by ImportMSData.
filename	Character, to give the filename for the TIC plotting.
imagename	Character, to give the filename of the TIC plotted. (only works for web version)

Examples

library(OptiLCMS)
data(mSet);
newPath <- dir(system.file("mzData", package = "mtbls2"),
               full.names = TRUE, recursive = TRUE)[c(10, 11, 12)]
mSet <- updateRawSpectraPath(mSet, newPath);
plotSingleTIC(mSet, "MSpos-Ex2-Col0-48h-Ag-2_1-A,3_01_9829.mzData", 
              "MSpos-Ex2-Col0-48h-Ag-2_1-A,3_01_9829.png")

Zhiqiang-PANG/OptiLCMS_web documentation built on May 1, 2021, 6:58 a.m.