lefse_rawdata: Prepare data for downstream Lefse analysis using asv.table,...
In ZhonghuiGai/gglefse: lefse analysis using usearch result, this package only can be used in Unix system
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/lefse_rawdata.R
Description
Prepare data for downstream Lefse analysis using asv.table, taxa info and the grouping metadata
Usage
1
lefse_rawdata(asv.path, taxa.path, group.path, lefse = TRUE)
Arguments
asv.path
the path of ASVs_table obtained using usearch
taxa.path
the path of ASV_taxa info obtained suing usearch
group.path
the grouping metadata
lefse
the logical value for which data to save
Value
a txt text file for lefse analysis
Author(s)
ZHonghuiGai
Examples
1
lefse_rawdata(asv.path = "ASVs_norm.txt", taxa.path = "ASV_tax2.txt", group.path = "group.txt", lefse = TRUE)
ZhonghuiGai/gglefse documentation built on Dec. 18, 2021, 8:28 p.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/lefse_rawdata.R
Description
Prepare data for downstream Lefse analysis using asv.table, taxa info and the grouping metadata
Usage
1 | lefse_rawdata(asv.path, taxa.path, group.path, lefse = TRUE)
|
Arguments
asv.path |
the path of ASVs_table obtained using usearch |
taxa.path |
the path of ASV_taxa info obtained suing usearch |
group.path |
the grouping metadata |
lefse |
the logical value for which data to save |
Value
a txt text file for lefse analysis
Author(s)
ZHonghuiGai
Examples
1 | lefse_rawdata(asv.path = "ASVs_norm.txt", taxa.path = "ASV_tax2.txt", group.path = "group.txt", lefse = TRUE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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