lefse_barplot: Draw a bar plot using the lefse analysis results
In ZhonghuiGai/gglefse: lefse analysis using usearch result, this package only can be used in Unix system
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/lefse_barplot.R
Description
Draw a bar plot using the lefse analysis results
Usage
1
lefse_barplot(data, size = 0.5, col = NULL, type = "npg")
Arguments
data
a data frame containing markers, grouping and LDA_value information
size
the width of bar
col
the col of bars, default value if NULL
type
the color type of gfun::scale_color_manual2
Value
a ggplot2 bar plot
Author(s)
Zhonghui Gai
Examples
1
2
3
4
5
6
library(gfun)
lefse.genus <- data.in("g_LDA.xlsx", rowname = F)
colnames(lefse.genus)[2] <- "group"
lefse.genus$markers <- factor(lefse.genus$markers, levels = lefse.genus$markers)
lefse.genus$group <- factor(lefse.genus$group, levels = c("HC", "A", "B"), labels = c("HC", "No-NAs", "TDF"))
lefse_barplot(data = lefse.genus) + ggtheme::theme_size()
ZhonghuiGai/gglefse documentation built on Dec. 18, 2021, 8:28 p.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/lefse_barplot.R
Description
Draw a bar plot using the lefse analysis results
Usage
1 | lefse_barplot(data, size = 0.5, col = NULL, type = "npg")
|
Arguments
data |
a data frame containing markers, grouping and LDA_value information |
size |
the width of bar |
col |
the col of bars, default value if NULL |
type |
the color type of gfun::scale_color_manual2 |
Value
a ggplot2 bar plot
Author(s)
Zhonghui Gai
Examples
1 2 3 4 5 6 | library(gfun)
lefse.genus <- data.in("g_LDA.xlsx", rowname = F)
colnames(lefse.genus)[2] <- "group"
lefse.genus$markers <- factor(lefse.genus$markers, levels = lefse.genus$markers)
lefse.genus$group <- factor(lefse.genus$group, levels = c("HC", "A", "B"), labels = c("HC", "No-NAs", "TDF"))
lefse_barplot(data = lefse.genus) + ggtheme::theme_size()
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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