ggPCoA: PCoA plot based on ggplot2 using the bray distance

In ZhonghuiGai/ggpca: PCA, PCoA, and NMD analysis based ggplot2

Description

PCoA plot based on ggplot2 using the bray distance

Usage

ggPCoA(data, pc = 12, level = 0.68, p.value = TRUE)

Arguments

data	A data frame containing the first collumn as the grouping information
pc	Which PC to present, one of 12, 13, 23, the default value is 12
level	default value is 0.68
p.value	boolean value to indicate whether to show the adonis p value, default value is TURE

Author(s)

ZhonghuiGai

Examples

data <- iris
data <- data[, c(5, 1:4)]
colnames(data)[1] <- "group"
ggPCoA(data)

ZhonghuiGai/ggpca documentation built on Dec. 18, 2021, 8:28 p.m.