| adductAnnotation | adductAnnotation |
| analysisGeneration | analysisGeneration |
| checkData | checkData |
| checkElement | checkElement |
| compareAnnotation | compareAnnotation |
| equalPeakinfo | equalPeakinfo |
| equalPeakinfo1 | equalPeakinfo1 |
| foldChange | foldChange |
| GetDiffMZppm | GetDiffMZppm |
| GetDotProduct | GetDotProduct |
| GetMatchResult | GetMatchResult |
| getNeighbor | getNeighbor |
| GetSpec2Match | GetSpec2Match |
| GetWeightedInt | GetWeightedInt |
| gseAnalysis | gseAnalysis |
| IdentifyFeature | IdentifyFeature |
| MatchFromTemp | MatchFromTemp |
| MatchSpec | MatchSpec |
| memoryList | memoryList |
| metABM | metABM |
| metAnnotation | metAnnotation |
| MetDNA | MetDNA |
| metEnrichment | metEnrichment |
| metModule | metModule |
| metPathway | metPathway |
| metPathway2 | metPathway2 |
| moduleplot | moduleplot |
| ms2Annotation | ms2Annotation |
| mseAnalysis | mseAnalysis |
| pasteElement | pasteElement |
| peakInfo-Class | moduleInfo |
| readAnnotation | readAnnotation |
| removeIsotope | removeIsotope |
| sendMail | sendMail |
| showTags2 | showTags2 |
| splitFormula | splitFormula |
| sumFormula | sumFormula |
| tags2Match | tags2Match |
| tags2Result | tags2Result |
| uniTest | uniTest |
| zipData | zipData |
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