gseAnalysis: gseAnalysis

In ZhuMSLab/MetDNA: MetDNA

gseAnalysis

Description

Gene sets enrichment analysis.

Usage

gseAnalysis(gene.id, species = c("hsa", "dme", "mmu", "rat", "bta", "gga",
  "dre", "cel", "sce", "ath", "smm", "pfa", "tbr", "eco", "ppu", "syf"),
  test.method = c("hypergeometric", "fisher"))

Arguments

gene.id	The vector of gene IDs.
species	The species. "hsa" is Homo sapiens (human), "dme" is Drosophlia melanogaster (fruit fly), "mmu" is Mus musculus (mouse), "rat" is Rattus norvegicus (rat), "bta" is Bos taurus (cow), "gga" is Gallus domesticus (chicken), "dre" is Danio rerio (zebrafish), "cel" is Caenorharomyces elegans (nematode), "sce" is Saccharomyces cerevisaiae (yeast), "ath" is Arabidopsis thaliana (thale cress), "smm" is Schistosoma mansoni, "pfa" is Plasmodum falciparum 3D7, "tbr" is Trypanosoma brucei, "eco" is Escherichia coli K-12 MG1655, "ppu" is Pseudomonas putida KT2440, "syf" is Synechococcus elongatus.
test.method	Hypergeometric or fisher test.

Value

The MSE analysis result.

Author(s)

Xiaotao Shen [e-mail]

ZhuMSLab/MetDNA documentation built on March 29, 2022, 5:45 p.m.