Man pages for Zouter/MPath
Mpath: a single-cell RNAseq data analysis algorithm that maps multi-branching single-cell trajectories revealing cell progression during development

build_networkbuild_network constructs weighted neighborhood network
color_code_node_2color_code_node_2 plot state transition network in which...
find_optimal_cluster_numberfind_optimal_cluster_number identifies the optimal number of...
heatmap_nborheatmap_nbor plot heatmap of gene expression
landmark_designationlandmark_designation clusters cells and determines landmark...
Mpath-packageMpath: an analysis algorithm that maps multi-branching...
nbor_ordernbor_order sorts individual cells according to their various...
pseudotimePlotByGenespseudotimeplotByGenes
QC_geneQC_gene removes genes that have TPM values < 1 in more than...
SC_anovaSC_anova run ANOVA test to identify differentially expressed...
SC_hcSC_hc hierachical clustering of single cells
SC_hc_colorCodeSC_hc_colorCode hierarchical clustering of single cells,...
trim_nettrim_net trimms the weighted neighborhood network by removing...
vgam_degvgam_deg identifies genes that were differentially expressed...
vgam_perGenevgam_perGene determines if a gene is differentially expressed...
Zouter/MPath documentation built on Oct. 18, 2017, 5:15 a.m.