Description Usage Arguments Value Examples
vgam_perGene determines if a gene is differentially expressed along the re-ordered single-cell trajectories using vgam
1 | vgam_perGene(expr, order, min_expr)
|
expr |
a vector of one gene's expression in different cells (ie. rpkm, TPM, fpkm) |
order |
a vector of re-ordered cell IDs |
min_expr |
a numeric value indicating the minimum TPM value for a gene to be considered as expressed. Default is 1. |
pval: p value of significance of the gene being differentially expressed
1 2 3 4 | ## Not run:
p_val <- vgam_perGene(expr,order,min_expr=1)
## End(Not run)
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