vgam_perGene: vgam_perGene determines if a gene is differentially expressed...

Description Usage Arguments Value Examples

View source: R/Mpath.R

Description

vgam_perGene determines if a gene is differentially expressed along the re-ordered single-cell trajectories using vgam

Usage

1
vgam_perGene(expr, order, min_expr)

Arguments

expr

a vector of one gene's expression in different cells (ie. rpkm, TPM, fpkm)

order

a vector of re-ordered cell IDs

min_expr

a numeric value indicating the minimum TPM value for a gene to be considered as expressed. Default is 1.

Value

pval: p value of significance of the gene being differentially expressed

Examples

1
2
3
4
## Not run: 
p_val <- vgam_perGene(expr,order,min_expr=1)

## End(Not run)

Zouter/MPath documentation built on May 4, 2019, 2:31 p.m.