API for aLFQ/aLFQ
Estimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data

Global functions
ALF Man page Source code
ALF.default Man page Source code
APEX Man page Source code
APEX.default Man page Source code
APEXMS Man page
APEX_LCQ Man page
APEX_ORBI Man page
AbsoluteQuantification Man page Source code
AbsoluteQuantification.default Man page Source code
LUDWIGMS Man page
LUDWIG_SRM Man page
PeptideInference Man page Source code
PeptideInference.default Man page Source code
ProteinInference Man page Source code
ProteinInference.default Man page Source code
UPS2 Man page
UPS2MS Man page
UPS2_LFQ Man page
UPS2_SC Man page
UPS2_SRM Man page
aLFQ Man page
aLFQ-package Man page
abacus_converter.import Source code
abacus_transform.import Source code
apexFeatures Man page Source code
apexFeatures.default Man page Source code
averageruns.import Source code
cval Man page Source code
cval.APEX Man page Source code
cval.AbsoluteQuantification Man page Source code
cval.default Man page Source code
export Man page Source code
export.AbsoluteQuantification Man page Source code
export.default Man page Source code
folderror.AbsoluteQuantification Source code
hist.AbsoluteQuantification Man page Source code
import Man page Source code
import.default Man page Source code
mprophet_converter.import Source code
openmslfq_converter.import Source code
openmslfq_transform.import Source code
openswath_converter.import Source code
pcfeatures.apexFeatures Source code
pepxml2csv_converter.import Source code
performanceplot.ALF Source code
pivot Man page Source code
pivot.AbsoluteQuantification Man page Source code
pivot.default Man page Source code
plot.APEX Man page Source code
plot.AbsoluteQuantification Man page Source code
predict.APEX Man page Source code
predict.AbsoluteQuantification Man page Source code
print.APEX Man page Source code
print.AbsoluteQuantification Man page Source code
print.apexFeatures Man page Source code
protein_inference.ProteinInference Source code
proteotypic Man page Source code
proteotypic.default Man page Source code
read_table.import Source code
scampi.ProteinInference Source code
skyline_converter.import Source code
strictnessfilter.ProteinInference Source code
stripsequence.import Source code
sumruns.import Source code
trypsin Source code
trypsin.default Source code
tune.ALF Source code
aLFQ/aLFQ documentation built on June 3, 2017, 10:50 a.m.