LUDWIGMS: Estimation of Absolute Protein Quantities of Unlabeled...
In aLFQ/aLFQ: Estimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data
Description
Usage
Format
References
See Also
Examples
Description
This dataset contains the Leptospira interrogans MS data from Ludwig C., et al. (2012).
Usage
1
Format
The data structure for LUDWIG_SRM represents a data.frame containing the following column header: "run_id" (freetext), "protein_id" (freetext), "peptide_id" (freetext), "transition_id" (freetext), "peptide_sequence" (unmodified, natural amino acid sequence in 1-letter nomenclature), "precursor_charge" (positive integer value), "transition_intensity" (positive non-logarithm floating value) and "concentration" (calibration: positive non-logarithm floating value, prediction: "?").
References
Ludwig, C., Claassen, M., Schmidt, A. & Aebersold, R. Estimation of Absolute Protein Quantities of Unlabeled Samples by Selected Reaction Monitoring Mass Spectrometry. Molecular & Cellular Proteomics 11, M111.013987-M111.013987 (2012).
See Also
import, ProteinInference, AbsoluteQuantification, ALF, APEX, apexFeatures, proteotypic
Examples
1
aLFQ/aLFQ documentation built on May 10, 2019, 1:59 a.m.
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Description Usage Format References See Also Examples
Description
This dataset contains the Leptospira interrogans MS data from Ludwig C., et al. (2012).
Usage
1 |
Format
The data structure for LUDWIG_SRM represents a data.frame containing the following column header: "run_id" (freetext), "protein_id" (freetext), "peptide_id" (freetext), "transition_id" (freetext), "peptide_sequence" (unmodified, natural amino acid sequence in 1-letter nomenclature), "precursor_charge" (positive integer value), "transition_intensity" (positive non-logarithm floating value) and "concentration" (calibration: positive non-logarithm floating value, prediction: "?").
References
Ludwig, C., Claassen, M., Schmidt, A. & Aebersold, R. Estimation of Absolute Protein Quantities of Unlabeled Samples by Selected Reaction Monitoring Mass Spectrometry. Molecular & Cellular Proteomics 11, M111.013987-M111.013987 (2012).
See Also
import, ProteinInference, AbsoluteQuantification, ALF, APEX, apexFeatures, proteotypic
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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