Files in aaaaana/changepoints

HMM/HMM_testing.R Jensed-Shannon/full_chromosome.R Jensed-Shannon/parallel_time_study.R Jensed-Shannon/plots_for_DNA.R Jensed-Shannon/simple_trial.R Jensed-Shannon/trial_genomic_data.R PELT.R R/HMM.R R/JSD.R R/dirichlet_bayesian_model.R R/fit_mle_matrices.R R/hello.R R/hierarchical_cluster.R R/load_data.R R/markov_chain_helpers.R R/plotfunction_DNA.R R/standard_tests.R algorithms.R bayesian_model/bayesian_mh_scheme.R bayesian_model/gibbs_latent_state_scheme.R comp_hor.pdf comparison.pdf cpt_genomic.R likelihood.R man/JSD_algorithm.Rd man/compute_entropy_MC.Rd man/find_best_split.Rd man/find_change_points_JSD.Rd man/hello.Rd man/perform_DNA_test.Rd papers/1 DNA Segmentation as A Model Selection Process.pdf papers/2 [walking Markov] Base compositional structure of genomes.pdf papers/3 Markov_models_of_genome_segmentation.pdf papers/4 Churchill1989_Article_StochasticModelsForHeterogeneo.pdf papers/4 yeast segmentation using HMM 150980.pdf papers/R1 [segmentation with divide and conquer] Compositional segmentation and long-range fractal correlations in DNA sequences.pdf papers/R1 [segmentation with divide and conquer] SEGMENT- identifying compositional domains in DNA sequence.pdf papers/R1 [segmentation] Churchill1989_Article_StochasticModelsForHeterogeneo.pdf papers/R1 [segmentation] DNA_Segmentation_Through_the_Bayesian_Ap.pdf papers/R1 [segmentation] statistical models for dna segmentation.pdf plotfunction.R presentation/Bayesian_Change_Point_Detection.pdf presentation/DNA_segments.pdf presentation/DNA_segments_count_2.pdf presentation/Grid_Merge.pdf presentation/MC.pdf presentation/binary_segmentation_alg.pdf presentation/changepoints_ana.pdf presentation/fig1.pdf presentation/fig2.pdf presentation/fig3.pdf presentation/main.pdf test_data/generate_data.R