Man pages for aametwally/MetaLonDA
Metagenomics Longitudinal Differential Abundance Method
| areaPermutation | Calculate Area Ratio (AR) of each feature's time interval for... |
| curveFitting | Fit longitudinal data |
| findSigInterval | Find significant time intervals |
| intervalArea | Calculate Area Ratio (AR) of each feature's time interval |
| metalonda | Metagenomic Longitudinal Differential Abundance Analysis for... |
| metalondaAll | Metagenomic Longitudinal Differential Abundance Analysis for... |
| metalonda_test_data | Simulated data of OTU abundance for 2 phenotypes each has 5... |
| normalize | Normalize count matrix |
| permutation | Permute group labels |
| visualizeArea | Visualize significant time interval |
| visualizeARHistogram | Visualize Area Ratio (AR) empirical distribution |
| visualizeFeature | Visualize Longitudinal Feature |
| visualizeFeatureSpline | Visualize the feature trajectory with the fitted Splines |
| visualizeTimeIntervals | Visualize all significant time intervals for all tested... |
| visualizeVolcanoPlot | Visualize log2 fold-change and significance of each interval... |
