visualizeArea: Visualize significant time interval

In aametwally/MetaLonDA: Metagenomics Longitudinal Differential Abundance Method

Description

Visualize significant time interval

Usage

visualizeArea(
  aggregate.df,
  model.ss,
  method,
  start,
  end,
  text,
  group.levels,
  unit = "days",
  ylabel = "Normalized Count",
  col = c("blue", "firebrick"),
  prefix = "Test"
)

Arguments

aggregate.df	Dataframe has the Count, Group, ID, Time
model.ss	The fitted model
method	Fitting method (negative binomial or LOWESS)
start	Vector of the start points of the time intervals
end	Vector of the end points of the time intervals
text	Feature name
group.levels	Level's name
unit	time unit used in the Time vector (hours, days, weeks, months, etc.)
ylabel	text to be shown on the y-axis of all generated figures (default: "Normalized Count")
col	two color to be used for the two groups (eg., c("red", "blue")).
prefix	prefix to be used to create directory for the analysis results

References

Ahmed Metwally ([e-mail])

aametwally/MetaLonDA documentation built on Dec. 26, 2019, 7:46 a.m.