Man pages for aametwally/MetaLonDA
Metagenomics Longitudinal Differential Abundance Method

areaPermutationCalculate Area Ratio (AR) of each feature's time interval for...
curveFittingFit longitudinal data
findSigIntervalFind significant time intervals
intervalAreaCalculate Area Ratio (AR) of each feature's time interval
metalondaMetagenomic Longitudinal Differential Abundance Analysis for...
metalondaAllMetagenomic Longitudinal Differential Abundance Analysis for...
metalonda_test_dataSimulated data of OTU abundance for 2 phenotypes each has 5...
normalizeNormalize count matrix
permutationPermute group labels
visualizeAreaVisualize significant time interval
visualizeARHistogramVisualize Area Ratio (AR) empirical distribution
visualizeFeatureVisualize Longitudinal Feature
visualizeFeatureSplineVisualize the feature trajectory with the fitted Splines
visualizeTimeIntervalsVisualize all significant time intervals for all tested...
aametwally/MetaLonDA documentation built on Feb. 16, 2018, 4:20 p.m.