Man pages for aappling-usgs/scipiper
Support functions for ushering data through a scientific workflow
| as_data_file | Return the data file name corresponding to the given... |
| as_ind_file | Returns the indicator name corresponding to the given data... |
| combine_to_ind | Create an indicator file that contains hashes of other files |
| combine_to_tibble | Create an object that contains hashes of other files |
| create_task_makefile | Create a .yml makefile for a multi-task job |
| create_task_plan | Define a set of tasks and steps within a single job |
| create_task_step | Create an object that defines a step within a task |
| create_task_table | Convert a task_plan into a status table |
| evaluate_step_element | Evaluate a step element into simple strings |
| fetch | Fetch objects from the scipiper data store without rebuilding... |
| find_local_file | decide whether local_source is an indicator or data file and... |
| gd_config | Create or overwrite a Google Drive configuration file |
| gd_confirm_posted | Check whether a file is on Google Drive, and if so, write an... |
| gd_get | Download a file from Google Drive if needed |
| gd_list | List the Google Drive objects for this project |
| gd_put | Upload a file to Google Drive |
| get_dependency_status | Retrieve status of dependencies from the remake store |
| get_mangled_key | Convert keys into mangled keys as used in the .remake storr |
| get_remake_status | Produce a table describing the remake build status relative... |
| hash_dependencies | Hash the depends objects of a target |
| hash_targets | Create a vector of hashes corresponding to a vector of... |
| is_ind_file | Determine whether target_names are indicator files |
| list_all_targets | Get a list of all targets in a remake file |
| list_group_targets | list targets in remake file that are fake/dummy/group targets |
| locate_build_status_yml | Get the file path and name for a scipiper build/status/*.yml... |
| loop_tasks | Build a job target by looping over the tasks and steps in a... |
| options | Scipiper session options |
| psprintf | Paste together sprintf-style text and variable values |
| RDSify_build_status | Copy info from build/status to .remake/objects |
| require_libs | Ensure the listed libraries are available |
| retry_patiently | Evaluate an expression with retries, waiting between tries |
| s3_config | Create or overwrite an S3 configuration file |
| s3_confirm_posted | Check whether a file is on S3, and if so, write an indicator... |
| s3_get | Download a file from S3 |
| s3_put | Upload a file to S3 |
| scbless | Declare to remake and scipiper that a target is current |
| scdel | Wrapper for remake::delete that permits cache sharing |
| sc_indicate | Create an indicator file |
| scipiper | Scipiper package: Streamlining scientific data analysis... |
| scmake | Wrapper for remake::make that permits cache sharing |
| sc_retrieve | Retrieve the data file declared by an indicator |
| setup_dirs | Create standard project directories |
| setup_files | Create standard project directories |
| sharedcache | Guidelines for sharing files in a team data analysis |
| time_conversions | Format a POSIXct timestamp with UTC into a character string |
| use_internal_function | This function replaces ::: to avoid CRAN check errors |
| which_dirty | List the targets for which current is FALSE (as a character... |
| why_dirty | Explain why a target is dirty |
| YAMLify_build_status | Copy info from .remake/objects to build/status |
