R/ssd_codes/crohns_uc.R
In aarmiller/codeBuildr: This package provides functions for loading project codes
## Codes for crohns_uc
# Description:
desc <- "Crohn's Disease & Ulcerative Colitis"
# Diagnosis codes:
# library(tidyverse)
# tmp <- read_csv("~/OneDrive - University of Iowa/Data/ssd_lists/from_phil/crohns_uc/dx9.csv") %>%
# filter(include==1) %>%
# distinct(code,description) %>%
# left_join(filter(codeBuildr::all_icd_labels,dx_ver==9) %>%
# select(code = dx,desc))
#
# tmp2 <- filter(tmp,is.na(desc)) %>%
# distinct(code,desc=description) %>%
# inner_join(filter(codeBuildr::all_icd_labels,dx_ver==9)) %>%
# select(code=dx,desc)
#
# tmp2 <- bind_rows(tmp %>%
# filter(!is.na(desc)) %>%
# select(code,desc),
# tmp2)
#
# cat(paste0("'",tmp2$code,"',", " #",tmp2$desc),sep="\n")
#
#
# tmp <- read_csv("~/OneDrive - University of Iowa/Data/ssd_lists/from_phil/crohns_uc/dx10.csv") %>%
# filter(include==1) %>%
# distinct(code,description) %>%
# left_join(filter(codeBuildr::all_icd_labels,dx_ver==10) %>%
# select(code = dx,desc))
#
# filter(tmp,is.na(desc))
#
# cat(paste0("'",tmp$code,"',", " #",tmp$desc),sep="\n")
icd9_codes <- as.character((c('78791', #Diarrhea
'5693', #Hemorrhage of rectum and anus
'5781', #Blood in stool
'78321', #Loss of weight
'78799', #Other symptoms involving digestive system
'53510', #Atrophic gastritis, without mention of hemorrhage
'78905', #Abdominal pain, periumbilic
'7921', #Nonspecific abnormal findings in stool contents
'7877', #Abnormal feces
'78906', #Abdominal pain, epigastric
'56400', #Constipation, unspecified
'5645', #Functional diarrhea
'56211', #Diverticulitis of colon (without mention of hemorrhage)
'56989', #Other specified disorders of intestine
'53560', #Duodenitis, without mention of hemorrhage
'78901', #Abdominal pain, right upper quadrant
'4558', #Unspecified hemorrhoids with other complication
'56201', #Diverticulitis of small intestine (without mention of hemorrhage)
'56982', #Ulceration of intestine
'56949', #Other specified disorders of rectum and anus
'78900', #Abdominal pain, unspecified site
'5589', #Other and unspecified noninfectious gastroenteritis and colitis
'78907', #Abdominal pain, generalized
'78909', #Abdominal pain, other specified site
'5789', #Hemorrhage of gastrointestinal tract, unspecified
'78701', #Nausea with vomiting
'78903', #Abdominal pain, right lower quadrant
'27651', #Dehydration
'78904', #Abdominal pain, left lower quadrant
'78060', #Fever, unspecified
'5609', #Unspecified intestinal obstruction
'78703', #Vomiting alone
'2768', #Hypopotassemia
'7934', #Nonspecific (abnormal) findings on radiological and other examination of gastrointestinal tract
'28860', #Leukocytosis, unspecified
'5579', #Unspecified vascular insufficiency of intestine
'5601', #Paralytic ileus
'5570', #Acute vascular insufficiency of intestine
'5409', #Acute appendicitis without mention of peritonitis
'541', #Appendicitis, unqualified
'56089', #Other specified intestinal obstruction
'5695', #Abscess of intestine
'56983', #Perforation of intestine
'4590', #Hemorrhage, unspecified
'78960', #Abdominal tenderness, unspecified site
'2892', #Nonspecific mesenteric lymphadenitis
'5400', #Acute appendicitis with generalized peritonitis
'5401', #Acute appendicitis with peritoneal abscess
'78933', #Abdominal or pelvic swelling, mass, or lump, right lower quadrant
'53012', #Acute esophagitis
'5439', #Other and unspecified diseases of appendix
'27652', #Hypovolemia
'2765', #Volume depletion
'7876', #Incontinence of feces
'53550', #Unspecified gastritis and gastroduodenitis, without mention of hemorrhage
'78702', #Nausea alone
'53540', #Other specified gastritis, without mention of hemorrhage
'78902', #Abdominal pain, left upper quadrant
'5379', #Unspecified disorder of stomach and duodenum
'56941', #Ulcer of anus and rectum
'53019', #Other esophagitis
'5690', #Anal and rectal polyp
'53290', #Duodenal ulcer, unspecified as acute or chronic, without hemorrhage or perforation, without mention of obstruction
'56213', #Diverticulitis of colon with hemorrhage
'5362', #Persistent vomiting
'5780', #Hematemesis
'5759', #Unspecified disorder of gallbladder
'5699', #Unspecified disorder of intestine
'27650', #Volume depletion, unspecified
'53020', #Ulcer of esophagus without bleeding
'7901', #Elevated sedimentation rate
'845', #Sprains and strains of ankle and foot
'57420', #Calculus of gallbladder without mention of cholecystitis, without mention of obstruction
'2761', #Hyposmolality and/or hyponatremia
'7806', #Fever and other physiologic disturbances of temperature regulation
'2760', #Hyperosmolality and/or hypernatremia
'78061', #Fever presenting with conditions classified elsewhere
'53130', #Acute gastric ulcer without mention of hemorrhage or perforation, without mention of obstruction
'56210', #Diverticulosis of colon (without mention of hemorrhage)
'4550', #Internal hemorrhoids without mention of complication
'7873', #Flatulence, eructation, and gas pain
'56942', #Anal or rectal pain
'4556', #Unspecified hemorrhoids without mention of complication
'53010', #Esophagitis, unspecified
'4589', #Hypotension, unspecified
'5650', #Anal fissure
'7850', #Tachycardia, unspecified
'4553', #External hemorrhoids without mention of complication
'78930', #Abdominal or pelvic swelling, mass, or lump, unspecified site
'5649', #Unspecified functional disorder of intestine
'53089', #Other specified disorders of esophagus
'78939', #Abdominal or pelvic swelling, mass, or lump, other specified site
'5571', #Chronic vascular insufficiency of intestine
'56401', #Slow transit constipation
'2713', #Intestinal disaccharidase deficiencies and disaccharide malabsorption
'9974', #Digestive system complications
'57400', #Calculus of gallbladder with acute cholecystitis, without mention of obstruction
'5750', #Acute cholecystitis
'5369', #Unspecified functional disorder of stomach
'78760', #Full incontinence of feces
'4149', #Chronic ischemic heart disease, unspecified
'5692', #Stenosis of rectum and anus
'5691', #Rectal prolapse
'53500', #Acute gastritis, without mention of hemorrhage
'5368', #Dyspepsia and other specified disorders of function of stomach
'7999', #Other unknown and unspecified cause of morbidity and mortality
'53190', #Gastric ulcer, unspecified as acute or chronic, without mention of hemorrhage or perforation, without mention of obstruction
'0093', #Diarrhea of presumed infectious origin
'0092', #Infectious diarrhea
'0088', #Intestinal infection due to other organism, not elsewhere classified
'0091', #Colitis, enteritis, and gastroenteritis of presumed infectious origin
'0090', #Infectious colitis, enteritis, and gastroenteritis
'0085' #Bacterial enteritis, unspecified
)))
icd10_codes <- as.character((c('R197', #Diarrhea, unspecified
'K625', #Hemorrhage of anus and rectum
'R634', #Abnormal weight loss
'R194', #Change in bowel habit
'K921', #Melena
'R1084', #Generalized abdominal pain
'K633', #Ulcer of intestine
'R1032', #Left lower quadrant pain
'K5289', #Other specified noninfective gastroenteritis and colitis
'R1030', #Lower abdominal pain, unspecified
'K269', #Duodenal ulcer, unspecified as acute or chronic, without hemorrhage or perforation
'R109', #Unspecified abdominal pain
'K2950', #Unspecified chronic gastritis without bleeding
'A09', #Infectious gastroenteritis and colitis, unspecified
'R1033', #Periumbilical pain
'K2980', #Duodenitis without bleeding
'K228', #Other specified diseases of esophagus
'R700', #Elevated erythrocyte sedimentation rate
'R152', #Fecal urgency
'L52', #Erythema nodosum
'R10813', #Right lower quadrant abdominal tenderness
'I880', #Nonspecific mesenteric lymphadenitis
'R143', #Flatulence
'R10817', #Generalized abdominal tenderness
'K629', #Disease of anus and rectum, unspecified
'K529', #Noninfective gastroenteritis and colitis, unspecified
'R1031', #Right lower quadrant pain
'R935', #Abnormal findings on diagnostic imaging of other abdominal regions, including retroperitoneum
'R112', #Nausea with vomiting, unspecified
'K2940', #Chronic atrophic gastritis without bleeding
'R7982', #Elevated C-reactive protein (CRP)
'K2210', #Ulcer of esophagus without bleeding
'K121', #Other forms of stomatitis
'R10819', #Abdominal tenderness, unspecified site
'K920', #Hematemesis
'K317', #Polyp of stomach and duodenum
'R509', #Fever, unspecified
'R1110', #Vomiting, unspecified
'K5720', #Diverticulitis of large intestine with perforation and abscess without bleeding
'K56690', #Other partial intestinal obstruction
'K5780', #Diverticulitis of intestine, part unspecified, with perforation and abscess without bleeding
'A049', #Bacterial intestinal infection, unspecified
'K2960', #Other gastritis without bleeding
'E869', #Volume depletion, unspecified
'K2990', #Gastroduodenitis, unspecified, without bleeding
'K5904', #Chronic idiopathic constipation
'R1909', #Other intra-abdominal and pelvic swelling, mass and lump
'K626', #Ulcer of anus and rectum
'K279', #Peptic ulcer, site unspecified, unspecified as acute or chronic, without hemorrhage or perforation
'K352', #Acute appendicitis with generalized peritonitis
'E860', #Dehydration
'K922', #Gastrointestinal hemorrhage, unspecified
'E876', #Hypokalemia
'D72829', #Elevated white blood cell count, unspecified
'R933', #Abnormal findings on diagnostic imaging of other parts of digestive tract
'Z20822', #Contact with and (suspected) exposure to COVID-19
'K5660', #Unspecified intestinal obstruction
'K56609', #Unspecified intestinal obstruction, unspecified as to partial versus complete obstruction
'K5669', #Other intestinal obstruction
'A084', #Viral intestinal infection, unspecified
'K567', #Ileus, unspecified
'R100', #Acute abdomen
'K559', #Vascular disorder of intestine, unspecified
'K208', #Other esophagitis
'K3580', #Unspecified acute appendicitis
'K56600', #Partial intestinal obstruction, unspecified as to cause
'K5641', #Fecal impaction
'K630', #Abscess of intestine
'R5081', #Fever presenting with conditions classified elsewhere
'K37', #Unspecified appendicitis
'R58', #Hemorrhage, not elsewhere classified
'R1111', #Vomiting without nausea
'A045', #Campylobacter enteritis
'K5731', #Diverticulosis of large intestine without perforation or abscess with bleeding
'K8050', #Calculus of bile duct without cholangitis or cholecystitis without obstruction
'R6510', #Systemic inflammatory response syndrome (SIRS) of non-infectious origin without acute organ dysfunction
'R10814', #Left lower quadrant abdominal tenderness
'K353', #Acute appendicitis with localized peritonitis
'R17', #Unspecified jaundice
'K2100', #Gastro-esophageal reflux disease with esophagitis, without bleeding
'K229', #Disease of esophagus, unspecified
'K565', #Intestinal adhesions [bands] with obstruction (postinfection)
'K581', #Irritable bowel syndrome with constipation
'K612', #Anorectal abscess
'R141', #Gas pain
'K561', #Intussusception
'K623', #Rectal prolapse
'K819', #Cholecystitis, unspecified
'K2090', #Esophagitis, unspecified without bleeding
'E861', #Hypovolemia
'K3533', #Acute appendicitis with perforation and localized peritonitis, with abscess
'K2971', #Gastritis, unspecified, with bleeding
'K810', #Acute cholecystitis
'N410', #Acute prostatitis
'R231', #Pallor
'R1013', #Epigastric pain
'K6389', #Other specified diseases of intestine
'K6289', #Other specified diseases of anus and rectum
'R110', #Nausea
'K2970', #Gastritis, unspecified, without bleeding
'R1011', #Right upper quadrant pain
'K209', #Esophagitis, unspecified
'R1010', #Upper abdominal pain, unspecified
'K591', #Functional diarrhea
'K649', #Unspecified hemorrhoids
'K602', #Anal fissure, unspecified
'K639', #Disease of intestine, unspecified
'R198', #Other specified symptoms and signs involving the digestive system and abdomen
'K259', #Gastric ulcer, unspecified as acute or chronic, without hemorrhage or perforation
'K319', #Disease of stomach and duodenum, unspecified
'R630', #Anorexia
'D124', #Benign neoplasm of descending colon
'R161', #Splenomegaly, not elsewhere classified
'K2930', #Chronic superficial gastritis without bleeding
'L0231', #Cutaneous abscess of buttock
'K641', #Second degree hemorrhoids
'K8010', #Calculus of gallbladder with chronic cholecystitis without obstruction
'G43A0', #Cyclical vomiting, not intractable
'K828', #Other specified diseases of gallbladder
'R1900', #Intra-abdominal and pelvic swelling, mass and lump, unspecified site
'K551', #Chronic vascular disorders of intestine
'K3189', #Other diseases of stomach and duodenum
'K611', #Rectal abscess
'K621', #Rectal polyp
'K521', #Toxic gastroenteritis and colitis
'R599', #Enlarged lymph nodes, unspecified
'R6520', #Severe sepsis without septic shock
'K659', #Peritonitis, unspecified
'D72828', #Other elevated white blood cell count
'K5900', #Constipation, unspecified
'A419', #Sepsis, unspecified organism
'E871', #Hypo-osmolality and hyponatremia
'R1012', #Left upper quadrant pain
'R188', #Other ascites
'A0472', #Enterocolitis due to Clostridium difficile, not specified as recurrent
'B9681', #Helicobacter pylori [H. pylori] as the cause of diseases classified elsewhere
'A048', #Other specified bacterial intestinal infections
'E870', #Hyperosmolality and hypernatremia
'K929', #Disease of digestive system, unspecified
'A0471', #Enterocolitis due to Clostridium difficile, recurrent
'R000', #Tachycardia, unspecified
'I959', #Hypotension, unspecified
'K5790', #Diverticulosis of intestine, part unspecified, without perforation or abscess without bleeding
'R591', #Generalized enlarged lymph nodes
'N10', #Acute pyelonephritis
'N3001', #Acute cystitis with hematuria
'R61', #Generalized hyperhidrosis
'K5732', #Diverticulitis of large intestine without perforation or abscess without bleeding
'A047', #Enterocolitis due to Clostridium difficile
'K5792', #Diverticulitis of intestine, part unspecified, without perforation or abscess without bleeding
'K523', #Indeterminate colitis
'K651', #Peritoneal abscess
'K56699', #Other intestinal obstruction unspecified as to partial versus complete obstruction
'K5901', #Slow transit constipation
'R12', #Heartburn
'K631', #Perforation of intestine (nontraumatic)
'L02211' #Cutaneous abscess of abdominal wall
)))
# Procedure codes:
pr_codes_icd9 <- c()
pr_codes_icd10 <- c()
pr_codes_cpt <- c()
# Medication codes
rx_codes <- c()
aarmiller/codeBuildr documentation built on April 14, 2025, 1:59 p.m.
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## Codes for crohns_uc
# Description:
desc <- "Crohn's Disease & Ulcerative Colitis"
# Diagnosis codes:
# library(tidyverse)
# tmp <- read_csv("~/OneDrive - University of Iowa/Data/ssd_lists/from_phil/crohns_uc/dx9.csv") %>%
# filter(include==1) %>%
# distinct(code,description) %>%
# left_join(filter(codeBuildr::all_icd_labels,dx_ver==9) %>%
# select(code = dx,desc))
#
# tmp2 <- filter(tmp,is.na(desc)) %>%
# distinct(code,desc=description) %>%
# inner_join(filter(codeBuildr::all_icd_labels,dx_ver==9)) %>%
# select(code=dx,desc)
#
# tmp2 <- bind_rows(tmp %>%
# filter(!is.na(desc)) %>%
# select(code,desc),
# tmp2)
#
# cat(paste0("'",tmp2$code,"',", " #",tmp2$desc),sep="\n")
#
#
# tmp <- read_csv("~/OneDrive - University of Iowa/Data/ssd_lists/from_phil/crohns_uc/dx10.csv") %>%
# filter(include==1) %>%
# distinct(code,description) %>%
# left_join(filter(codeBuildr::all_icd_labels,dx_ver==10) %>%
# select(code = dx,desc))
#
# filter(tmp,is.na(desc))
#
# cat(paste0("'",tmp$code,"',", " #",tmp$desc),sep="\n")
icd9_codes <- as.character((c('78791', #Diarrhea
'5693', #Hemorrhage of rectum and anus
'5781', #Blood in stool
'78321', #Loss of weight
'78799', #Other symptoms involving digestive system
'53510', #Atrophic gastritis, without mention of hemorrhage
'78905', #Abdominal pain, periumbilic
'7921', #Nonspecific abnormal findings in stool contents
'7877', #Abnormal feces
'78906', #Abdominal pain, epigastric
'56400', #Constipation, unspecified
'5645', #Functional diarrhea
'56211', #Diverticulitis of colon (without mention of hemorrhage)
'56989', #Other specified disorders of intestine
'53560', #Duodenitis, without mention of hemorrhage
'78901', #Abdominal pain, right upper quadrant
'4558', #Unspecified hemorrhoids with other complication
'56201', #Diverticulitis of small intestine (without mention of hemorrhage)
'56982', #Ulceration of intestine
'56949', #Other specified disorders of rectum and anus
'78900', #Abdominal pain, unspecified site
'5589', #Other and unspecified noninfectious gastroenteritis and colitis
'78907', #Abdominal pain, generalized
'78909', #Abdominal pain, other specified site
'5789', #Hemorrhage of gastrointestinal tract, unspecified
'78701', #Nausea with vomiting
'78903', #Abdominal pain, right lower quadrant
'27651', #Dehydration
'78904', #Abdominal pain, left lower quadrant
'78060', #Fever, unspecified
'5609', #Unspecified intestinal obstruction
'78703', #Vomiting alone
'2768', #Hypopotassemia
'7934', #Nonspecific (abnormal) findings on radiological and other examination of gastrointestinal tract
'28860', #Leukocytosis, unspecified
'5579', #Unspecified vascular insufficiency of intestine
'5601', #Paralytic ileus
'5570', #Acute vascular insufficiency of intestine
'5409', #Acute appendicitis without mention of peritonitis
'541', #Appendicitis, unqualified
'56089', #Other specified intestinal obstruction
'5695', #Abscess of intestine
'56983', #Perforation of intestine
'4590', #Hemorrhage, unspecified
'78960', #Abdominal tenderness, unspecified site
'2892', #Nonspecific mesenteric lymphadenitis
'5400', #Acute appendicitis with generalized peritonitis
'5401', #Acute appendicitis with peritoneal abscess
'78933', #Abdominal or pelvic swelling, mass, or lump, right lower quadrant
'53012', #Acute esophagitis
'5439', #Other and unspecified diseases of appendix
'27652', #Hypovolemia
'2765', #Volume depletion
'7876', #Incontinence of feces
'53550', #Unspecified gastritis and gastroduodenitis, without mention of hemorrhage
'78702', #Nausea alone
'53540', #Other specified gastritis, without mention of hemorrhage
'78902', #Abdominal pain, left upper quadrant
'5379', #Unspecified disorder of stomach and duodenum
'56941', #Ulcer of anus and rectum
'53019', #Other esophagitis
'5690', #Anal and rectal polyp
'53290', #Duodenal ulcer, unspecified as acute or chronic, without hemorrhage or perforation, without mention of obstruction
'56213', #Diverticulitis of colon with hemorrhage
'5362', #Persistent vomiting
'5780', #Hematemesis
'5759', #Unspecified disorder of gallbladder
'5699', #Unspecified disorder of intestine
'27650', #Volume depletion, unspecified
'53020', #Ulcer of esophagus without bleeding
'7901', #Elevated sedimentation rate
'845', #Sprains and strains of ankle and foot
'57420', #Calculus of gallbladder without mention of cholecystitis, without mention of obstruction
'2761', #Hyposmolality and/or hyponatremia
'7806', #Fever and other physiologic disturbances of temperature regulation
'2760', #Hyperosmolality and/or hypernatremia
'78061', #Fever presenting with conditions classified elsewhere
'53130', #Acute gastric ulcer without mention of hemorrhage or perforation, without mention of obstruction
'56210', #Diverticulosis of colon (without mention of hemorrhage)
'4550', #Internal hemorrhoids without mention of complication
'7873', #Flatulence, eructation, and gas pain
'56942', #Anal or rectal pain
'4556', #Unspecified hemorrhoids without mention of complication
'53010', #Esophagitis, unspecified
'4589', #Hypotension, unspecified
'5650', #Anal fissure
'7850', #Tachycardia, unspecified
'4553', #External hemorrhoids without mention of complication
'78930', #Abdominal or pelvic swelling, mass, or lump, unspecified site
'5649', #Unspecified functional disorder of intestine
'53089', #Other specified disorders of esophagus
'78939', #Abdominal or pelvic swelling, mass, or lump, other specified site
'5571', #Chronic vascular insufficiency of intestine
'56401', #Slow transit constipation
'2713', #Intestinal disaccharidase deficiencies and disaccharide malabsorption
'9974', #Digestive system complications
'57400', #Calculus of gallbladder with acute cholecystitis, without mention of obstruction
'5750', #Acute cholecystitis
'5369', #Unspecified functional disorder of stomach
'78760', #Full incontinence of feces
'4149', #Chronic ischemic heart disease, unspecified
'5692', #Stenosis of rectum and anus
'5691', #Rectal prolapse
'53500', #Acute gastritis, without mention of hemorrhage
'5368', #Dyspepsia and other specified disorders of function of stomach
'7999', #Other unknown and unspecified cause of morbidity and mortality
'53190', #Gastric ulcer, unspecified as acute or chronic, without mention of hemorrhage or perforation, without mention of obstruction
'0093', #Diarrhea of presumed infectious origin
'0092', #Infectious diarrhea
'0088', #Intestinal infection due to other organism, not elsewhere classified
'0091', #Colitis, enteritis, and gastroenteritis of presumed infectious origin
'0090', #Infectious colitis, enteritis, and gastroenteritis
'0085' #Bacterial enteritis, unspecified
)))
icd10_codes <- as.character((c('R197', #Diarrhea, unspecified
'K625', #Hemorrhage of anus and rectum
'R634', #Abnormal weight loss
'R194', #Change in bowel habit
'K921', #Melena
'R1084', #Generalized abdominal pain
'K633', #Ulcer of intestine
'R1032', #Left lower quadrant pain
'K5289', #Other specified noninfective gastroenteritis and colitis
'R1030', #Lower abdominal pain, unspecified
'K269', #Duodenal ulcer, unspecified as acute or chronic, without hemorrhage or perforation
'R109', #Unspecified abdominal pain
'K2950', #Unspecified chronic gastritis without bleeding
'A09', #Infectious gastroenteritis and colitis, unspecified
'R1033', #Periumbilical pain
'K2980', #Duodenitis without bleeding
'K228', #Other specified diseases of esophagus
'R700', #Elevated erythrocyte sedimentation rate
'R152', #Fecal urgency
'L52', #Erythema nodosum
'R10813', #Right lower quadrant abdominal tenderness
'I880', #Nonspecific mesenteric lymphadenitis
'R143', #Flatulence
'R10817', #Generalized abdominal tenderness
'K629', #Disease of anus and rectum, unspecified
'K529', #Noninfective gastroenteritis and colitis, unspecified
'R1031', #Right lower quadrant pain
'R935', #Abnormal findings on diagnostic imaging of other abdominal regions, including retroperitoneum
'R112', #Nausea with vomiting, unspecified
'K2940', #Chronic atrophic gastritis without bleeding
'R7982', #Elevated C-reactive protein (CRP)
'K2210', #Ulcer of esophagus without bleeding
'K121', #Other forms of stomatitis
'R10819', #Abdominal tenderness, unspecified site
'K920', #Hematemesis
'K317', #Polyp of stomach and duodenum
'R509', #Fever, unspecified
'R1110', #Vomiting, unspecified
'K5720', #Diverticulitis of large intestine with perforation and abscess without bleeding
'K56690', #Other partial intestinal obstruction
'K5780', #Diverticulitis of intestine, part unspecified, with perforation and abscess without bleeding
'A049', #Bacterial intestinal infection, unspecified
'K2960', #Other gastritis without bleeding
'E869', #Volume depletion, unspecified
'K2990', #Gastroduodenitis, unspecified, without bleeding
'K5904', #Chronic idiopathic constipation
'R1909', #Other intra-abdominal and pelvic swelling, mass and lump
'K626', #Ulcer of anus and rectum
'K279', #Peptic ulcer, site unspecified, unspecified as acute or chronic, without hemorrhage or perforation
'K352', #Acute appendicitis with generalized peritonitis
'E860', #Dehydration
'K922', #Gastrointestinal hemorrhage, unspecified
'E876', #Hypokalemia
'D72829', #Elevated white blood cell count, unspecified
'R933', #Abnormal findings on diagnostic imaging of other parts of digestive tract
'Z20822', #Contact with and (suspected) exposure to COVID-19
'K5660', #Unspecified intestinal obstruction
'K56609', #Unspecified intestinal obstruction, unspecified as to partial versus complete obstruction
'K5669', #Other intestinal obstruction
'A084', #Viral intestinal infection, unspecified
'K567', #Ileus, unspecified
'R100', #Acute abdomen
'K559', #Vascular disorder of intestine, unspecified
'K208', #Other esophagitis
'K3580', #Unspecified acute appendicitis
'K56600', #Partial intestinal obstruction, unspecified as to cause
'K5641', #Fecal impaction
'K630', #Abscess of intestine
'R5081', #Fever presenting with conditions classified elsewhere
'K37', #Unspecified appendicitis
'R58', #Hemorrhage, not elsewhere classified
'R1111', #Vomiting without nausea
'A045', #Campylobacter enteritis
'K5731', #Diverticulosis of large intestine without perforation or abscess with bleeding
'K8050', #Calculus of bile duct without cholangitis or cholecystitis without obstruction
'R6510', #Systemic inflammatory response syndrome (SIRS) of non-infectious origin without acute organ dysfunction
'R10814', #Left lower quadrant abdominal tenderness
'K353', #Acute appendicitis with localized peritonitis
'R17', #Unspecified jaundice
'K2100', #Gastro-esophageal reflux disease with esophagitis, without bleeding
'K229', #Disease of esophagus, unspecified
'K565', #Intestinal adhesions [bands] with obstruction (postinfection)
'K581', #Irritable bowel syndrome with constipation
'K612', #Anorectal abscess
'R141', #Gas pain
'K561', #Intussusception
'K623', #Rectal prolapse
'K819', #Cholecystitis, unspecified
'K2090', #Esophagitis, unspecified without bleeding
'E861', #Hypovolemia
'K3533', #Acute appendicitis with perforation and localized peritonitis, with abscess
'K2971', #Gastritis, unspecified, with bleeding
'K810', #Acute cholecystitis
'N410', #Acute prostatitis
'R231', #Pallor
'R1013', #Epigastric pain
'K6389', #Other specified diseases of intestine
'K6289', #Other specified diseases of anus and rectum
'R110', #Nausea
'K2970', #Gastritis, unspecified, without bleeding
'R1011', #Right upper quadrant pain
'K209', #Esophagitis, unspecified
'R1010', #Upper abdominal pain, unspecified
'K591', #Functional diarrhea
'K649', #Unspecified hemorrhoids
'K602', #Anal fissure, unspecified
'K639', #Disease of intestine, unspecified
'R198', #Other specified symptoms and signs involving the digestive system and abdomen
'K259', #Gastric ulcer, unspecified as acute or chronic, without hemorrhage or perforation
'K319', #Disease of stomach and duodenum, unspecified
'R630', #Anorexia
'D124', #Benign neoplasm of descending colon
'R161', #Splenomegaly, not elsewhere classified
'K2930', #Chronic superficial gastritis without bleeding
'L0231', #Cutaneous abscess of buttock
'K641', #Second degree hemorrhoids
'K8010', #Calculus of gallbladder with chronic cholecystitis without obstruction
'G43A0', #Cyclical vomiting, not intractable
'K828', #Other specified diseases of gallbladder
'R1900', #Intra-abdominal and pelvic swelling, mass and lump, unspecified site
'K551', #Chronic vascular disorders of intestine
'K3189', #Other diseases of stomach and duodenum
'K611', #Rectal abscess
'K621', #Rectal polyp
'K521', #Toxic gastroenteritis and colitis
'R599', #Enlarged lymph nodes, unspecified
'R6520', #Severe sepsis without septic shock
'K659', #Peritonitis, unspecified
'D72828', #Other elevated white blood cell count
'K5900', #Constipation, unspecified
'A419', #Sepsis, unspecified organism
'E871', #Hypo-osmolality and hyponatremia
'R1012', #Left upper quadrant pain
'R188', #Other ascites
'A0472', #Enterocolitis due to Clostridium difficile, not specified as recurrent
'B9681', #Helicobacter pylori [H. pylori] as the cause of diseases classified elsewhere
'A048', #Other specified bacterial intestinal infections
'E870', #Hyperosmolality and hypernatremia
'K929', #Disease of digestive system, unspecified
'A0471', #Enterocolitis due to Clostridium difficile, recurrent
'R000', #Tachycardia, unspecified
'I959', #Hypotension, unspecified
'K5790', #Diverticulosis of intestine, part unspecified, without perforation or abscess without bleeding
'R591', #Generalized enlarged lymph nodes
'N10', #Acute pyelonephritis
'N3001', #Acute cystitis with hematuria
'R61', #Generalized hyperhidrosis
'K5732', #Diverticulitis of large intestine without perforation or abscess without bleeding
'A047', #Enterocolitis due to Clostridium difficile
'K5792', #Diverticulitis of intestine, part unspecified, without perforation or abscess without bleeding
'K523', #Indeterminate colitis
'K651', #Peritoneal abscess
'K56699', #Other intestinal obstruction unspecified as to partial versus complete obstruction
'K5901', #Slow transit constipation
'R12', #Heartburn
'K631', #Perforation of intestine (nontraumatic)
'L02211' #Cutaneous abscess of abdominal wall
)))
# Procedure codes:
pr_codes_icd9 <- c()
pr_codes_icd10 <- c()
pr_codes_cpt <- c()
# Medication codes
rx_codes <- c()
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