R/ssd_codes/epidural_abs.R
In aarmiller/codeBuildr: This package provides functions for loading project codes
## Codes for epidural_abs
# Description:
desc <- "Epidural Abscess"
# Diagnosis codes:
# tmp <- read_csv("~/Documents/GitHub/delay_dx/params/ssd_codes/spine_abs/ssd_codes.csv")
#
# tmp2 <- tmp %>%
# filter(icd_version == 9) %>%
# distinct(code = icd_codes) %>%
# left_join(mutate(icd::icd9cm_hierarchy,code=as.character(code))) %>%
# distinct(code,desc=short_desc)
#
# cat(paste0("'",tmp2$code,"',", " #",tmp2$desc),sep="\n")
#
# tmp2 <- tmp %>%
# filter(icd_version == 10) %>%
# distinct(code = icd_codes) %>%
# left_join(mutate(icd::icd10cm2019,code=as.character(code))) %>%
# distinct(code,desc=short_desc)
#
# cat(paste0("'",tmp2$code,"',", " #",tmp2$desc),sep="\n")
icd9_codes <- as.character((c('33819', #Acute pain NEC
'33829', #Chronic pain NEC
'56400', #Constipation NOS
'71940', #Joint pain-unspec
'71941', #Joint pain-shlder
'71942', #Joint pain-up/arm
'71943', #Joint pain-forearm
'71944', #Joint pain-hand
'71945', #Joint pain-pelvis
'71946', #Joint pain-l/leg
'71947', #Joint pain-ankle
'71949', #Joint pain-mult jts
'7197', #Difficulty in walking
'7231', #Cervicalgia
'7241', #Pain in thoracic spine
'7242', #Lumbago
'7245', #Backache NOS
'7248', #Other back symptoms
'72887', #Muscle weakness-general
'7291', #Myalgia and myositis NOS
'7295', #Pain in limb
'72982', #Cramp in limb
'72989', #Muscskel sympt limb NEC
'7806', #Fever and other physiologic disturbances of temperature regulation
'78060', #Fever NOS
'78079', #Malaise and fatigue NEC
'78096', #Generalized pain
'78199', #Nerve/musculskel sym NEC
'7820', #Skin sensation disturb
'7840', #Headache
'78605', #Shortness of breath
'78650', #Chest pain NOS
'78651', #Precordial pain
'78652', #Painful respiration
'78659', #Chest pain NEC
'78720', #Dysphagia NOS
'78900', #Abdmnal pain unspcf site
'78901', #Abdmnal pain rt upr quad
'78903', #Abdmnal pain rt lwr quad
'78904', #Abdmnal pain lt lwr quad
'78905', #Abdmnal pain periumbilic
'78906', #Abdmnal pain epigastric
'78907', #Abdmnal pain generalized
'78909', #Abdmnal pain oth spcf st
'7881', #Dysuria
'78841', #Urinary frequency
'486', #Pneumonia, organism NOS
'5990', #Urin tract infection NOS
'07999', #Viral infection NOS
'2749', #Gout NOS
'71500', #General osteoarthrosis
'71509', #General osteoarthrosis
'71511', #Loc prim osteoart-shlder
'71515', #Loc prim osteoart-pelvis
'71516', #Loc prim osteoart-l/leg
'71530', #Loc osteoarth NOS-unspec
'71536', #Loc osteoarth NOS-l/leg
'71590', #Osteoarthros NOS-unspec
'71591', #Osteoarthros NOS-shlder
'71595', #Osteoarthros NOS-pelvis
'71596', #Osteoarthros NOS-l/leg
'71597', #Osteoarthros NOS-ankle
'71648', #Trans arthropathy NEC
'71688', #Arthropathy NEC-oth site
'71690', #Arthropathy NOS-unspec
'7202', #Sacroiliitis NEC
'7210', #Cervical spondylosis
'7211', #Cerv spondyl w myelopath
'7212', #Thoracic spondylosis
'7213', #Lumbosacral spondylosis
'72142', #Spond compr lumb sp cord
'7218', #Spinal disorders NEC
'72190', #Spondylos NOS w/o myelop
'7220', #Cervical disc displacmnt
'72210', #Lumbar disc displacement
'72211', #Thoracic disc displacmnt
'7222', #Disc displacement NOS
'7224', #Cervical disc degen
'72251', #Thoracic disc degen
'72252', #Lumb/lumbosac disc degen
'7226', #Disc degeneration NOS
'72271', #Cerv disc dis w myelopat
'72273', #Lumb disc dis w myelopat
'72290', #Disc dis NEC/NOS-unspec
'72292', #Disc dis NEC/NOS-thorac
'72293', #Disc dis NEC/NOS-lumbar
'7230', #Cervical spinal stenosis
'7232', #Cervicocranial syndrome
'7233', #Cervicobrachial syndrome
'7238', #Cervical syndrome NEC
'7239', #Neck disorder/sympt NOS
'72400', #Spinal stenosis NOS
'72401', #Spinal stenosis-thoracic
'72402', #Spin sten,lumbr wo claud
'72403', #Spin sten,lumbr w claud
'7243', #Sciatica
'7244', #Lumbosacral neuritis NOS
'7246', #Disorders of sacrum
'72470', #Disorder of coccyx NOS
'72479', #Disorder of coccyx NEC
'7249', #Back disorder NOS
'72610', #Rotator cuff synd NOS
'7262', #Shoulder region dis NEC
'7265', #Enthesopathy of hip
'72706', #Tenosynovitis foot/ankle
'72885', #Spasm of muscle
'7289', #Muscle/ligament dis NOS
'72999', #Soft tissue disorder NEC
'73300', #Osteoporosis NOS
'73301', #Senile osteoporosis
'73313', #Path fx vertebrae
'73390', #Bone & cartilage dis NOS
'73399', #Bone & cartilage dis NEC
'73730', #Idiopathic scoliosis
'73739', #Scoliosis NEC
'7384', #Acq spondylolisthesis
'75612', #Spondylolisthesis
'8052', #Fx dorsal vertebra-close
'8054', #Fx lumbar vertebra-close
'83908', #Disloc mult cerv vert-cl
'83920', #Dislocat lumbar vert-cl
'83921', #Disloc thoracic vert-cl
'8409', #Sprain shoulder/arm NOS
'8439', #Sprain hip & thigh NOS
'8449', #Sprain of knee & leg NOS
'84500', #Sprain of ankle NOS
'8460', #Sprain lumbosacral
'8461', #Sprain sacroiliac
'8470', #Sprain of neck
'8471', #Sprain thoracic region
'8472', #Sprain lumbar region
'8479', #Sprain of back NOS
'8485', #Sprain of pelvis
'8488', #Sprain NEC
'9089', #Late effect injury NOS
'95909', #Face & neck injury
'9596', #Hip & thigh injury NOS
'9597', #Lower leg injury NOS
'30781', #Tension headache
'3239', #Encephalitis NOS
'3320', #Paralysis agitans
'3361', #Vascular myelopathies
'3368', #Myelopathy NEC
'3369', #Spinal cord disease NOS
'3384', #Chronic pain syndrome
'33910', #Tension headache NOS
'34281', #Ot sp hmiplga domnt side
'34282', #Ot sp hmiplg nondmnt sde
'34290', #Unsp hemiplga unspf side
'34291', #Unsp hemiplga domnt side
'34292', #Unsp hmiplga nondmnt sde
'34400', #Quadriplegia, unspecifd
'34409', #Other quadriplegia
'3441', #Paraplegia NOS
'34610', #Mgrn wo aura wo ntrc mgr
'3530', #Brachial plexus lesions
'3532', #Cervical root lesion NEC
'3540', #Carpal tunnel syndrome
'3542', #Ulnar nerve lesion
'3558', #Mononeuritis leg NOS
'3559', #Mononeuritis NOS
'3569', #Idio periph neurpthy NOS
'3579', #Inflam/tox neuropthy NOS
'4359', #Trans cereb ischemia NOS
'436', #Cva
'43822', #Late ef-hemiplga non-dom
'4439', #Periph vascular dis NOS
'7135', #Arthropathy w nerve dis
'7292', #Neuralgia/neuritis NOS
'7234', #Brachial neuritis NOS
'7235', #Torticollis NOS
'73605', #Wrist drop
'57420', #Cholelithiasis NOS
'5920', #Calculus of kidney
'5932', #Cyst of kidney, acquired
'59654', #Neurogenic bladder NOS
'78820', #Retention urine NOS
'78830', #Urinary incontinence NOS
'28529', #Anemia-other chronic dis
'2859', #Anemia NOS
'2875', #Thrombocytopenia NOS
'28860', #Leukocytosis NOS
'7812', #Abnormality of gait
'78321', #Abnormal loss of weight
'7937' #Nonsp abn find-ms system
)))
icd10_codes <- as.character((c('G8929', #Other chronic pain
'K5900', #Constipation, unspecified
'M160', #Bilateral primary osteoarthritis of hip
'M2550', #Pain in unspecified joint
'M25511', #Pain in right shoulder
'M25512', #Pain in left shoulder
'M25519', #Pain in unspecified shoulder
'M25529', #Pain in unspecified elbow
'M25531', #Pain in right wrist
'M25532', #Pain in left wrist
'M25539', #Pain in unspecified wrist
'M25551', #Pain in right hip
'M25552', #Pain in left hip
'M25559', #Pain in unspecified hip
'M25569', #Pain in unspecified knee
'M25579', #Pain in unspecified ankle and joints of unspecified foot
'M545', #Low back pain
'M546', #Pain in thoracic spine
'M5489', #Other dorsalgia
'M549', #Dorsalgia, unspecified
'M6281', #Muscle weakness (generalized)
'M62830', #Muscle spasm of back
'M791', #Myalgia
'M79601', #Pain in right arm
'M79602', #Pain in left arm
'M79604', #Pain in right leg
'M79605', #Pain in left leg
'M79606', #Pain in leg, unspecified
'M79609', #Pain in unspecified limb
'M79641', #Pain in right hand
'M79642', #Pain in left hand
'M79643', #Pain in unspecified hand
'M79646', #Pain in unspecified finger(s)
'M79661', #Pain in right lower leg
'M79662', #Pain in left lower leg
'R071', #Chest pain on breathing
'R072', #Precordial pain
'R0781', #Pleurodynia
'R0782', #Intercostal pain
'R0789', #Other chest pain
'R079', #Chest pain, unspecified
'R1010', #Upper abdominal pain, unspecified
'R1011', #Right upper quadrant pain
'R1012', #Left upper quadrant pain
'R1013', #Epigastric pain
'R102', #Pelvic and perineal pain
'R1030', #Lower abdominal pain, unspecified
'R1031', #Right lower quadrant pain
'R1032', #Left lower quadrant pain
'R1084', #Generalized abdominal pain
'R109', #Unspecified abdominal pain
'R130', #Aphagia
'R1310', #Dysphagia, unspecified
'R200', #Anesthesia of skin
'R201', #Hypoesthesia of skin
'R202', #Paresthesia of skin
'R203', #Hyperesthesia
'R208', #Other disturbances of skin sensation
'R209', #Unspecified disturbances of skin sensation
'R252', #Cramp and spasm
'R262', #Difficulty in walking, not elsewhere classified
'R270', #Ataxia, unspecified
'R29898', #Oth symptoms and signs involving the musculoskeletal system
'R300', #Dysuria
'R309', #Painful micturition, unspecified
'R350', #Frequency of micturition
'R509', #Fever, unspecified
'R51', #Headache
'R52', #Pain, unspecified
'R531', #Weakness
'R5381', #Other malaise
'R5383', #Other fatigue
'M542', #Cervicalgia
'B9789', #Oth viral agents as the cause of diseases classd elswhr
'J189', #Pneumonia, unspecified organism
'N390', #Urinary tract infection, site not specified
'M109', #Gout, unspecified
'M1288', #Oth specific arthropathies, NEC, oth site
'M129', #Arthropathy, unspecified
'M150', #Primary generalized (osteo)arthritis
'M159', #Polyosteoarthritis, unspecified
'M1611', #Unilateral primary osteoarthritis, right hip
'M169', #Osteoarthritis of hip, unspecified
'M1710', #Unilateral primary osteoarthritis, unspecified knee
'M179', #Osteoarthritis of knee, unspecified
'M19011', #Primary osteoarthritis, right shoulder
'M1990', #Unspecified osteoarthritis, unspecified site
'M2578', #Osteophyte, vertebrae
'M4120', #Other idiopathic scoliosis, site unspecified
'M4180', #Other forms of scoliosis, site unspecified
'M4186', #Other forms of scoliosis, lumbar region
'M419', #Scoliosis, unspecified
'M4300', #Spondylolysis, site unspecified
'M4306', #Spondylolysis, lumbar region
'M4310', #Spondylolisthesis, site unspecified
'M4312', #Spondylolisthesis, cervical region
'M4316', #Spondylolisthesis, lumbar region
'M4317', #Spondylolisthesis, lumbosacral region
'M438X9', #Other specified deforming dorsopathies, site unspecified
'M461', #Sacroiliitis, not elsewhere classified
'M4712', #Other spondylosis with myelopathy, cervical region
'M4716', #Other spondylosis with myelopathy, lumbar region
'M4722', #Other spondylosis with radiculopathy, cervical region
'M4726', #Other spondylosis with radiculopathy, lumbar region
'M4727', #Other spondylosis with radiculopathy, lumbosacral region
'M47812', #Spondylosis w/o myelopathy or radiculopathy, cervical region
'M47814', #Spondylosis w/o myelopathy or radiculopathy, thoracic region
'M47816', #Spondylosis w/o myelopathy or radiculopathy, lumbar region
'M47817', #Spondyls w/o myelopathy or radiculopathy, lumbosacr region
'M47819', #Spondylosis without myelopathy or radiculopathy, site unsp
'M47892', #Other spondylosis, cervical region
'M47896', #Other spondylosis, lumbar region
'M47897', #Other spondylosis, lumbosacral region
'M479', #Spondylosis, unspecified
'M4800', #Spinal stenosis, site unspecified
'M4802', #Spinal stenosis, cervical region
'M4804', #Spinal stenosis, thoracic region
'M4806', #Spinal stenosis, lumbar region
'M48061', #Spinal stenosis, lumbar region without neurogenic claud
'M48062', #Spinal stenosis, lumbar region with neurogenic claudication
'M4807', #Spinal stenosis, lumbosacral region
'M4850XA', #Collapsed vertebra, NEC, site unsp, init
'M4856XA', #Collapsed vertebra, NEC, lumbar region, init
'M488X4', #Other specified spondylopathies, thoracic region
'M489', #Spondylopathy, unspecified
'M5000', #Cervical disc disorder with myelopathy, unsp cervical region
'M5002', #Cervical disc disorder with myelopathy, mid-cervical region
'M5010', #Cervical disc disorder w radiculopathy, unsp cervical region
'M5012', #Cervical disc disorder w radiculopathy, mid-cervical region
'M5013', #Cervical disc disorder w radiculopathy, cervicothor region
'M5020', #Other cervical disc displacement, unsp cervical region
'M5021', #Other cervical disc displacement, high cervical region
'M5022', #Other cervical disc displacement, mid-cervical region
'M5030', #Other cervical disc degeneration, unsp cervical region
'M5031', #Other cervical disc degeneration, high cervical region
'M5032', #Other cervical disc degeneration, mid-cervical region
'M5033', #Other cervical disc degeneration, cervicothoracic region
'M5106', #Intervertebral disc disorders with myelopathy, lumbar region
'M5116', #Intervertebral disc disorders w radiculopathy, lumbar region
'M5117', #Intvrt disc disorders w radiculopathy, lumbosacral region
'M5124', #Other intervertebral disc displacement, thoracic region
'M5126', #Other intervertebral disc displacement, lumbar region
'M5127', #Other intervertebral disc displacement, lumbosacral region
'M5134', #Other intervertebral disc degeneration, thoracic region
'M5135', #Other intervertebral disc degeneration, thoracolumbar region
'M5136', #Other intervertebral disc degeneration, lumbar region
'M5137', #Other intervertebral disc degeneration, lumbosacral region
'M5184', #Other intervertebral disc disorders, thoracic region
'M5185', #Other intervertebral disc disorders, thoracolumbar region
'M5186', #Other intervertebral disc disorders, lumbar region
'M5187', #Other intervertebral disc disorders, lumbosacral region
'M519', #Unsp thoracic, thoracolum and lumbosacr intvrt disc disorder
'M609', #Myositis, unspecified
'M629', #Disorder of muscle, unspecified
'M6240', #Contracture of muscle, unspecified site
'M6249', #Contracture of muscle, multiple sites
'M62838', #Other muscle spasm
'M65879', #Other synovitis and tenosynovitis, unsp ankle and foot
'M7060', #Trochanteric bursitis, unspecified hip
'M7070', #Other bursitis of hip, unspecified hip
'M7610', #Psoas tendinitis, unspecified hip
'M7620', #Iliac crest spur, unspecified hip
'M75100', #Unsp rotatr-cuff tear/ruptr of unsp shoulder, not trauma
'M7530', #Calcific tendinitis of unspecified shoulder
'M7540', #Impingement syndrome of unspecified shoulder
'M7550', #Bursitis of unspecified shoulder
'M7580', #Other shoulder lesions, unspecified shoulder
'M7989', #Other specified soft tissue disorders
'M8008XA', #Age-rel osteopor w current path fracture, vertebra(e), init
'M810', #Age-related osteoporosis w/o current pathological fracture
'M8448XA', #Pathological fracture, other site, init encntr for fracture
'M8468XA', #Pathological fracture in oth disease, oth site, init for fx
'M8930', #Hypertrophy of bone, unspecified site
'M898X9', #Other specified disorders of bone, unspecified site
'M899', #Disorder of bone, unspecified
'M948X9', #Other specified disorders of cartilage, unspecified sites
'M949', #Disorder of cartilage, unspecified
'M9971', #Conn tiss and disc stenosis of intvrt foramin of cerv region
'S13101A', #Dislocation of unspecified cervical vertebrae, init encntr
'S134XXA', #Sprain of ligaments of cervical spine, initial encounter
'S134XXD', #Sprain of ligaments of cervical spine, subsequent encounter
'S138XXA', #Sprain of joints and ligaments of oth prt neck, init encntr
'S161XXA', #Strain of muscle, fascia and tendon at neck level, init
'S161XXD', #Strain of muscle, fascia and tendon at neck level, subs
'S199XXA', #Unspecified injury of neck, initial encounter
'S22009A', #Unsp fracture of unsp thoracic vertebra, init for clos fx
'S23131A', #Dislocation of T4/T5 thoracic vertebra, initial encounter
'S233XXA', #Sprain of ligaments of thoracic spine, initial encounter
'S238XXA', #Sprain of other specified parts of thorax, initial encounter
'S239XXA', #Sprain of unspecified parts of thorax, initial encounter
'S32009A', #Unsp fracture of unsp lumbar vertebra, init for clos fx
'S33101A', #Dislocation of unspecified lumbar vertebra, init encntr
'S335XXA', #Sprain of ligaments of lumbar spine, initial encounter
'S335XXD', #Sprain of ligaments of lumbar spine, subsequent encounter
'S336XXA', #Sprain of sacroiliac joint, initial encounter
'S338XXA', #Sprain of oth parts of lumbar spine and pelvis, init encntr
'S39012A', #Strain of muscle, fascia and tendon of lower back, init
'S39012D', #Strain of muscle, fascia and tendon of lower back, subs
'S3992XA', #Unspecified injury of lower back, initial encounter
'S43409A', #Unsp sprain of unspecified shoulder joint, init encntr
'S46919A', #Strain unsp musc/fasc/tend at shldr/up arm, unsp arm, init
'S73109A', #Unspecified sprain of unspecified hip, initial encounter
'S76919A', #Strain of unsp musc/fasc/tend at thi lev, unsp thigh, init
'S79819A', #Other specified injuries of unspecified hip, init encntr
'S79829A', #Other specified injuries of unspecified thigh, init encntr
'S79919A', #Unspecified injury of unspecified hip, initial encounter
'S79929A', #Unspecified injury of unspecified thigh, initial encounter
'S8390XA', #Sprain of unspecified site of unspecified knee, init encntr
'S86919A', #Strain of unsp musc/tend at lower leg level, unsp leg, init
'S8980XA', #Oth injuries of unspecified lower leg, init encntr
'S8990XA', #Unspecified injury of unspecified lower leg, init encntr
'S93409A', #Sprain of unsp ligament of unspecified ankle, init encntr
'S96919A', #Strain of unsp msl/tnd at ank/ft level, unsp foot, init
'S99819A', #Other specified injuries of unspecified ankle, init encntr
'S99919A', #Unspecified injury of unspecified ankle, initial encounter
'G0490', #Encephalitis and encephalomyelitis, unspecified
'G0491', #Myelitis, unspecified
'G43009', #Migraine w/o aura, not intractable, w/o status migrainosus
'G441', #Vascular headache, not elsewhere classified
'G44209', #Tension-type headache, unspecified, not intractable
'G459', #Transient cerebral ischemic attack, unspecified
'G540', #Brachial plexus disorders
'G542', #Cervical root disorders, not elsewhere classified
'G5600', #Carpal tunnel syndrome, unspecified upper limb
'G5601', #Carpal tunnel syndrome, right upper limb
'G5602', #Carpal tunnel syndrome, left upper limb
'G5620', #Lesion of ulnar nerve, unspecified upper limb
'G5790', #Unspecified mononeuropathy of unspecified lower limb
'G589', #Mononeuropathy, unspecified
'G609', #Hereditary and idiopathic neuropathy, unspecified
'G629', #Polyneuropathy, unspecified
'G8190', #Hemiplegia, unspecified affecting unspecified side
'G8191', #Hemiplegia, unspecified affecting right dominant side
'G8194', #Hemiplegia, unspecified affecting left nondominant side
'G8220', #Paraplegia, unspecified
'G8222', #Paraplegia, incomplete
'G8250', #Quadriplegia, unspecified
'G894', #Chronic pain syndrome
'G9520', #Unspecified cord compression
'G959', #Disease of spinal cord, unspecified
'I6789', #Other cerebrovascular disease
'I69354', #Hemiplga following cerebral infrc affecting left nondom side
'I69848', #NA
'I739', #Peripheral vascular disease, unspecified
'M21339', #Wrist drop, unspecified wrist
'M21371', #Foot drop, right foot
'M21372', #Foot drop, left foot
'M436', #Torticollis
'M530', #Cervicocranial syndrome
'M531', #Cervicobrachial syndrome
'M533', #Sacrococcygeal disorders, not elsewhere classified
'M5382', #Other specified dorsopathies, cervical region
'M5386', #Other specified dorsopathies, lumbar region
'M539', #Dorsopathy, unspecified
'M5410', #Radiculopathy, site unspecified
'M5412', #Radiculopathy, cervical region
'M5413', #Radiculopathy, cervicothoracic region
'M5414', #Radiculopathy, thoracic region
'M5415', #Radiculopathy, thoracolumbar region
'M5416', #Radiculopathy, lumbar region
'M5417', #Radiculopathy, lumbosacral region
'M5430', #Sciatica, unspecified side
'M5431', #Sciatica, right side
'M5432', #Sciatica, left side
'M5440', #Lumbago with sciatica, unspecified side
'M5441', #Lumbago with sciatica, right side
'M5442', #Lumbago with sciatica, left side
'M5481', #Occipital neuralgia
'M792', #Neuralgia and neuritis, unspecified
'K8020', #Calculus of gallbladder w/o cholecystitis w/o obstruction
'N200', #Calculus of kidney
'N281', #Cyst of kidney, acquired
'N319', #Neuromuscular dysfunction of bladder, unspecified
'R32', #Unspecified urinary incontinence
'R339', #Retention of urine, unspecified
'D638', #Anemia in other chronic diseases classified elsewhere
'D649', #Anemia, unspecified
'D696', #Thrombocytopenia, unspecified
'D72829', #Elevated white blood cell count, unspecified
'R2689', #Other abnormalities of gait and mobility
'R269', #Unspecified abnormalities of gait and mobility
'R634', #Abnormal weight loss
'R260', #Ataxic gait
'R261', #Paralytic gait
'R936', #Abnormal findings on diagnostic imaging of limbs
'R937' #Abnormal findings on diagnostic imaging of prt ms sys
)))
# Procedure codes:
pr_codes_icd9 <- c()
pr_codes_icd10 <- c()
pr_codes_cpt <- c()
# Medication codes
rx_codes <- c()
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## Codes for epidural_abs
# Description:
desc <- "Epidural Abscess"
# Diagnosis codes:
# tmp <- read_csv("~/Documents/GitHub/delay_dx/params/ssd_codes/spine_abs/ssd_codes.csv")
#
# tmp2 <- tmp %>%
# filter(icd_version == 9) %>%
# distinct(code = icd_codes) %>%
# left_join(mutate(icd::icd9cm_hierarchy,code=as.character(code))) %>%
# distinct(code,desc=short_desc)
#
# cat(paste0("'",tmp2$code,"',", " #",tmp2$desc),sep="\n")
#
# tmp2 <- tmp %>%
# filter(icd_version == 10) %>%
# distinct(code = icd_codes) %>%
# left_join(mutate(icd::icd10cm2019,code=as.character(code))) %>%
# distinct(code,desc=short_desc)
#
# cat(paste0("'",tmp2$code,"',", " #",tmp2$desc),sep="\n")
icd9_codes <- as.character((c('33819', #Acute pain NEC
'33829', #Chronic pain NEC
'56400', #Constipation NOS
'71940', #Joint pain-unspec
'71941', #Joint pain-shlder
'71942', #Joint pain-up/arm
'71943', #Joint pain-forearm
'71944', #Joint pain-hand
'71945', #Joint pain-pelvis
'71946', #Joint pain-l/leg
'71947', #Joint pain-ankle
'71949', #Joint pain-mult jts
'7197', #Difficulty in walking
'7231', #Cervicalgia
'7241', #Pain in thoracic spine
'7242', #Lumbago
'7245', #Backache NOS
'7248', #Other back symptoms
'72887', #Muscle weakness-general
'7291', #Myalgia and myositis NOS
'7295', #Pain in limb
'72982', #Cramp in limb
'72989', #Muscskel sympt limb NEC
'7806', #Fever and other physiologic disturbances of temperature regulation
'78060', #Fever NOS
'78079', #Malaise and fatigue NEC
'78096', #Generalized pain
'78199', #Nerve/musculskel sym NEC
'7820', #Skin sensation disturb
'7840', #Headache
'78605', #Shortness of breath
'78650', #Chest pain NOS
'78651', #Precordial pain
'78652', #Painful respiration
'78659', #Chest pain NEC
'78720', #Dysphagia NOS
'78900', #Abdmnal pain unspcf site
'78901', #Abdmnal pain rt upr quad
'78903', #Abdmnal pain rt lwr quad
'78904', #Abdmnal pain lt lwr quad
'78905', #Abdmnal pain periumbilic
'78906', #Abdmnal pain epigastric
'78907', #Abdmnal pain generalized
'78909', #Abdmnal pain oth spcf st
'7881', #Dysuria
'78841', #Urinary frequency
'486', #Pneumonia, organism NOS
'5990', #Urin tract infection NOS
'07999', #Viral infection NOS
'2749', #Gout NOS
'71500', #General osteoarthrosis
'71509', #General osteoarthrosis
'71511', #Loc prim osteoart-shlder
'71515', #Loc prim osteoart-pelvis
'71516', #Loc prim osteoart-l/leg
'71530', #Loc osteoarth NOS-unspec
'71536', #Loc osteoarth NOS-l/leg
'71590', #Osteoarthros NOS-unspec
'71591', #Osteoarthros NOS-shlder
'71595', #Osteoarthros NOS-pelvis
'71596', #Osteoarthros NOS-l/leg
'71597', #Osteoarthros NOS-ankle
'71648', #Trans arthropathy NEC
'71688', #Arthropathy NEC-oth site
'71690', #Arthropathy NOS-unspec
'7202', #Sacroiliitis NEC
'7210', #Cervical spondylosis
'7211', #Cerv spondyl w myelopath
'7212', #Thoracic spondylosis
'7213', #Lumbosacral spondylosis
'72142', #Spond compr lumb sp cord
'7218', #Spinal disorders NEC
'72190', #Spondylos NOS w/o myelop
'7220', #Cervical disc displacmnt
'72210', #Lumbar disc displacement
'72211', #Thoracic disc displacmnt
'7222', #Disc displacement NOS
'7224', #Cervical disc degen
'72251', #Thoracic disc degen
'72252', #Lumb/lumbosac disc degen
'7226', #Disc degeneration NOS
'72271', #Cerv disc dis w myelopat
'72273', #Lumb disc dis w myelopat
'72290', #Disc dis NEC/NOS-unspec
'72292', #Disc dis NEC/NOS-thorac
'72293', #Disc dis NEC/NOS-lumbar
'7230', #Cervical spinal stenosis
'7232', #Cervicocranial syndrome
'7233', #Cervicobrachial syndrome
'7238', #Cervical syndrome NEC
'7239', #Neck disorder/sympt NOS
'72400', #Spinal stenosis NOS
'72401', #Spinal stenosis-thoracic
'72402', #Spin sten,lumbr wo claud
'72403', #Spin sten,lumbr w claud
'7243', #Sciatica
'7244', #Lumbosacral neuritis NOS
'7246', #Disorders of sacrum
'72470', #Disorder of coccyx NOS
'72479', #Disorder of coccyx NEC
'7249', #Back disorder NOS
'72610', #Rotator cuff synd NOS
'7262', #Shoulder region dis NEC
'7265', #Enthesopathy of hip
'72706', #Tenosynovitis foot/ankle
'72885', #Spasm of muscle
'7289', #Muscle/ligament dis NOS
'72999', #Soft tissue disorder NEC
'73300', #Osteoporosis NOS
'73301', #Senile osteoporosis
'73313', #Path fx vertebrae
'73390', #Bone & cartilage dis NOS
'73399', #Bone & cartilage dis NEC
'73730', #Idiopathic scoliosis
'73739', #Scoliosis NEC
'7384', #Acq spondylolisthesis
'75612', #Spondylolisthesis
'8052', #Fx dorsal vertebra-close
'8054', #Fx lumbar vertebra-close
'83908', #Disloc mult cerv vert-cl
'83920', #Dislocat lumbar vert-cl
'83921', #Disloc thoracic vert-cl
'8409', #Sprain shoulder/arm NOS
'8439', #Sprain hip & thigh NOS
'8449', #Sprain of knee & leg NOS
'84500', #Sprain of ankle NOS
'8460', #Sprain lumbosacral
'8461', #Sprain sacroiliac
'8470', #Sprain of neck
'8471', #Sprain thoracic region
'8472', #Sprain lumbar region
'8479', #Sprain of back NOS
'8485', #Sprain of pelvis
'8488', #Sprain NEC
'9089', #Late effect injury NOS
'95909', #Face & neck injury
'9596', #Hip & thigh injury NOS
'9597', #Lower leg injury NOS
'30781', #Tension headache
'3239', #Encephalitis NOS
'3320', #Paralysis agitans
'3361', #Vascular myelopathies
'3368', #Myelopathy NEC
'3369', #Spinal cord disease NOS
'3384', #Chronic pain syndrome
'33910', #Tension headache NOS
'34281', #Ot sp hmiplga domnt side
'34282', #Ot sp hmiplg nondmnt sde
'34290', #Unsp hemiplga unspf side
'34291', #Unsp hemiplga domnt side
'34292', #Unsp hmiplga nondmnt sde
'34400', #Quadriplegia, unspecifd
'34409', #Other quadriplegia
'3441', #Paraplegia NOS
'34610', #Mgrn wo aura wo ntrc mgr
'3530', #Brachial plexus lesions
'3532', #Cervical root lesion NEC
'3540', #Carpal tunnel syndrome
'3542', #Ulnar nerve lesion
'3558', #Mononeuritis leg NOS
'3559', #Mononeuritis NOS
'3569', #Idio periph neurpthy NOS
'3579', #Inflam/tox neuropthy NOS
'4359', #Trans cereb ischemia NOS
'436', #Cva
'43822', #Late ef-hemiplga non-dom
'4439', #Periph vascular dis NOS
'7135', #Arthropathy w nerve dis
'7292', #Neuralgia/neuritis NOS
'7234', #Brachial neuritis NOS
'7235', #Torticollis NOS
'73605', #Wrist drop
'57420', #Cholelithiasis NOS
'5920', #Calculus of kidney
'5932', #Cyst of kidney, acquired
'59654', #Neurogenic bladder NOS
'78820', #Retention urine NOS
'78830', #Urinary incontinence NOS
'28529', #Anemia-other chronic dis
'2859', #Anemia NOS
'2875', #Thrombocytopenia NOS
'28860', #Leukocytosis NOS
'7812', #Abnormality of gait
'78321', #Abnormal loss of weight
'7937' #Nonsp abn find-ms system
)))
icd10_codes <- as.character((c('G8929', #Other chronic pain
'K5900', #Constipation, unspecified
'M160', #Bilateral primary osteoarthritis of hip
'M2550', #Pain in unspecified joint
'M25511', #Pain in right shoulder
'M25512', #Pain in left shoulder
'M25519', #Pain in unspecified shoulder
'M25529', #Pain in unspecified elbow
'M25531', #Pain in right wrist
'M25532', #Pain in left wrist
'M25539', #Pain in unspecified wrist
'M25551', #Pain in right hip
'M25552', #Pain in left hip
'M25559', #Pain in unspecified hip
'M25569', #Pain in unspecified knee
'M25579', #Pain in unspecified ankle and joints of unspecified foot
'M545', #Low back pain
'M546', #Pain in thoracic spine
'M5489', #Other dorsalgia
'M549', #Dorsalgia, unspecified
'M6281', #Muscle weakness (generalized)
'M62830', #Muscle spasm of back
'M791', #Myalgia
'M79601', #Pain in right arm
'M79602', #Pain in left arm
'M79604', #Pain in right leg
'M79605', #Pain in left leg
'M79606', #Pain in leg, unspecified
'M79609', #Pain in unspecified limb
'M79641', #Pain in right hand
'M79642', #Pain in left hand
'M79643', #Pain in unspecified hand
'M79646', #Pain in unspecified finger(s)
'M79661', #Pain in right lower leg
'M79662', #Pain in left lower leg
'R071', #Chest pain on breathing
'R072', #Precordial pain
'R0781', #Pleurodynia
'R0782', #Intercostal pain
'R0789', #Other chest pain
'R079', #Chest pain, unspecified
'R1010', #Upper abdominal pain, unspecified
'R1011', #Right upper quadrant pain
'R1012', #Left upper quadrant pain
'R1013', #Epigastric pain
'R102', #Pelvic and perineal pain
'R1030', #Lower abdominal pain, unspecified
'R1031', #Right lower quadrant pain
'R1032', #Left lower quadrant pain
'R1084', #Generalized abdominal pain
'R109', #Unspecified abdominal pain
'R130', #Aphagia
'R1310', #Dysphagia, unspecified
'R200', #Anesthesia of skin
'R201', #Hypoesthesia of skin
'R202', #Paresthesia of skin
'R203', #Hyperesthesia
'R208', #Other disturbances of skin sensation
'R209', #Unspecified disturbances of skin sensation
'R252', #Cramp and spasm
'R262', #Difficulty in walking, not elsewhere classified
'R270', #Ataxia, unspecified
'R29898', #Oth symptoms and signs involving the musculoskeletal system
'R300', #Dysuria
'R309', #Painful micturition, unspecified
'R350', #Frequency of micturition
'R509', #Fever, unspecified
'R51', #Headache
'R52', #Pain, unspecified
'R531', #Weakness
'R5381', #Other malaise
'R5383', #Other fatigue
'M542', #Cervicalgia
'B9789', #Oth viral agents as the cause of diseases classd elswhr
'J189', #Pneumonia, unspecified organism
'N390', #Urinary tract infection, site not specified
'M109', #Gout, unspecified
'M1288', #Oth specific arthropathies, NEC, oth site
'M129', #Arthropathy, unspecified
'M150', #Primary generalized (osteo)arthritis
'M159', #Polyosteoarthritis, unspecified
'M1611', #Unilateral primary osteoarthritis, right hip
'M169', #Osteoarthritis of hip, unspecified
'M1710', #Unilateral primary osteoarthritis, unspecified knee
'M179', #Osteoarthritis of knee, unspecified
'M19011', #Primary osteoarthritis, right shoulder
'M1990', #Unspecified osteoarthritis, unspecified site
'M2578', #Osteophyte, vertebrae
'M4120', #Other idiopathic scoliosis, site unspecified
'M4180', #Other forms of scoliosis, site unspecified
'M4186', #Other forms of scoliosis, lumbar region
'M419', #Scoliosis, unspecified
'M4300', #Spondylolysis, site unspecified
'M4306', #Spondylolysis, lumbar region
'M4310', #Spondylolisthesis, site unspecified
'M4312', #Spondylolisthesis, cervical region
'M4316', #Spondylolisthesis, lumbar region
'M4317', #Spondylolisthesis, lumbosacral region
'M438X9', #Other specified deforming dorsopathies, site unspecified
'M461', #Sacroiliitis, not elsewhere classified
'M4712', #Other spondylosis with myelopathy, cervical region
'M4716', #Other spondylosis with myelopathy, lumbar region
'M4722', #Other spondylosis with radiculopathy, cervical region
'M4726', #Other spondylosis with radiculopathy, lumbar region
'M4727', #Other spondylosis with radiculopathy, lumbosacral region
'M47812', #Spondylosis w/o myelopathy or radiculopathy, cervical region
'M47814', #Spondylosis w/o myelopathy or radiculopathy, thoracic region
'M47816', #Spondylosis w/o myelopathy or radiculopathy, lumbar region
'M47817', #Spondyls w/o myelopathy or radiculopathy, lumbosacr region
'M47819', #Spondylosis without myelopathy or radiculopathy, site unsp
'M47892', #Other spondylosis, cervical region
'M47896', #Other spondylosis, lumbar region
'M47897', #Other spondylosis, lumbosacral region
'M479', #Spondylosis, unspecified
'M4800', #Spinal stenosis, site unspecified
'M4802', #Spinal stenosis, cervical region
'M4804', #Spinal stenosis, thoracic region
'M4806', #Spinal stenosis, lumbar region
'M48061', #Spinal stenosis, lumbar region without neurogenic claud
'M48062', #Spinal stenosis, lumbar region with neurogenic claudication
'M4807', #Spinal stenosis, lumbosacral region
'M4850XA', #Collapsed vertebra, NEC, site unsp, init
'M4856XA', #Collapsed vertebra, NEC, lumbar region, init
'M488X4', #Other specified spondylopathies, thoracic region
'M489', #Spondylopathy, unspecified
'M5000', #Cervical disc disorder with myelopathy, unsp cervical region
'M5002', #Cervical disc disorder with myelopathy, mid-cervical region
'M5010', #Cervical disc disorder w radiculopathy, unsp cervical region
'M5012', #Cervical disc disorder w radiculopathy, mid-cervical region
'M5013', #Cervical disc disorder w radiculopathy, cervicothor region
'M5020', #Other cervical disc displacement, unsp cervical region
'M5021', #Other cervical disc displacement, high cervical region
'M5022', #Other cervical disc displacement, mid-cervical region
'M5030', #Other cervical disc degeneration, unsp cervical region
'M5031', #Other cervical disc degeneration, high cervical region
'M5032', #Other cervical disc degeneration, mid-cervical region
'M5033', #Other cervical disc degeneration, cervicothoracic region
'M5106', #Intervertebral disc disorders with myelopathy, lumbar region
'M5116', #Intervertebral disc disorders w radiculopathy, lumbar region
'M5117', #Intvrt disc disorders w radiculopathy, lumbosacral region
'M5124', #Other intervertebral disc displacement, thoracic region
'M5126', #Other intervertebral disc displacement, lumbar region
'M5127', #Other intervertebral disc displacement, lumbosacral region
'M5134', #Other intervertebral disc degeneration, thoracic region
'M5135', #Other intervertebral disc degeneration, thoracolumbar region
'M5136', #Other intervertebral disc degeneration, lumbar region
'M5137', #Other intervertebral disc degeneration, lumbosacral region
'M5184', #Other intervertebral disc disorders, thoracic region
'M5185', #Other intervertebral disc disorders, thoracolumbar region
'M5186', #Other intervertebral disc disorders, lumbar region
'M5187', #Other intervertebral disc disorders, lumbosacral region
'M519', #Unsp thoracic, thoracolum and lumbosacr intvrt disc disorder
'M609', #Myositis, unspecified
'M629', #Disorder of muscle, unspecified
'M6240', #Contracture of muscle, unspecified site
'M6249', #Contracture of muscle, multiple sites
'M62838', #Other muscle spasm
'M65879', #Other synovitis and tenosynovitis, unsp ankle and foot
'M7060', #Trochanteric bursitis, unspecified hip
'M7070', #Other bursitis of hip, unspecified hip
'M7610', #Psoas tendinitis, unspecified hip
'M7620', #Iliac crest spur, unspecified hip
'M75100', #Unsp rotatr-cuff tear/ruptr of unsp shoulder, not trauma
'M7530', #Calcific tendinitis of unspecified shoulder
'M7540', #Impingement syndrome of unspecified shoulder
'M7550', #Bursitis of unspecified shoulder
'M7580', #Other shoulder lesions, unspecified shoulder
'M7989', #Other specified soft tissue disorders
'M8008XA', #Age-rel osteopor w current path fracture, vertebra(e), init
'M810', #Age-related osteoporosis w/o current pathological fracture
'M8448XA', #Pathological fracture, other site, init encntr for fracture
'M8468XA', #Pathological fracture in oth disease, oth site, init for fx
'M8930', #Hypertrophy of bone, unspecified site
'M898X9', #Other specified disorders of bone, unspecified site
'M899', #Disorder of bone, unspecified
'M948X9', #Other specified disorders of cartilage, unspecified sites
'M949', #Disorder of cartilage, unspecified
'M9971', #Conn tiss and disc stenosis of intvrt foramin of cerv region
'S13101A', #Dislocation of unspecified cervical vertebrae, init encntr
'S134XXA', #Sprain of ligaments of cervical spine, initial encounter
'S134XXD', #Sprain of ligaments of cervical spine, subsequent encounter
'S138XXA', #Sprain of joints and ligaments of oth prt neck, init encntr
'S161XXA', #Strain of muscle, fascia and tendon at neck level, init
'S161XXD', #Strain of muscle, fascia and tendon at neck level, subs
'S199XXA', #Unspecified injury of neck, initial encounter
'S22009A', #Unsp fracture of unsp thoracic vertebra, init for clos fx
'S23131A', #Dislocation of T4/T5 thoracic vertebra, initial encounter
'S233XXA', #Sprain of ligaments of thoracic spine, initial encounter
'S238XXA', #Sprain of other specified parts of thorax, initial encounter
'S239XXA', #Sprain of unspecified parts of thorax, initial encounter
'S32009A', #Unsp fracture of unsp lumbar vertebra, init for clos fx
'S33101A', #Dislocation of unspecified lumbar vertebra, init encntr
'S335XXA', #Sprain of ligaments of lumbar spine, initial encounter
'S335XXD', #Sprain of ligaments of lumbar spine, subsequent encounter
'S336XXA', #Sprain of sacroiliac joint, initial encounter
'S338XXA', #Sprain of oth parts of lumbar spine and pelvis, init encntr
'S39012A', #Strain of muscle, fascia and tendon of lower back, init
'S39012D', #Strain of muscle, fascia and tendon of lower back, subs
'S3992XA', #Unspecified injury of lower back, initial encounter
'S43409A', #Unsp sprain of unspecified shoulder joint, init encntr
'S46919A', #Strain unsp musc/fasc/tend at shldr/up arm, unsp arm, init
'S73109A', #Unspecified sprain of unspecified hip, initial encounter
'S76919A', #Strain of unsp musc/fasc/tend at thi lev, unsp thigh, init
'S79819A', #Other specified injuries of unspecified hip, init encntr
'S79829A', #Other specified injuries of unspecified thigh, init encntr
'S79919A', #Unspecified injury of unspecified hip, initial encounter
'S79929A', #Unspecified injury of unspecified thigh, initial encounter
'S8390XA', #Sprain of unspecified site of unspecified knee, init encntr
'S86919A', #Strain of unsp musc/tend at lower leg level, unsp leg, init
'S8980XA', #Oth injuries of unspecified lower leg, init encntr
'S8990XA', #Unspecified injury of unspecified lower leg, init encntr
'S93409A', #Sprain of unsp ligament of unspecified ankle, init encntr
'S96919A', #Strain of unsp msl/tnd at ank/ft level, unsp foot, init
'S99819A', #Other specified injuries of unspecified ankle, init encntr
'S99919A', #Unspecified injury of unspecified ankle, initial encounter
'G0490', #Encephalitis and encephalomyelitis, unspecified
'G0491', #Myelitis, unspecified
'G43009', #Migraine w/o aura, not intractable, w/o status migrainosus
'G441', #Vascular headache, not elsewhere classified
'G44209', #Tension-type headache, unspecified, not intractable
'G459', #Transient cerebral ischemic attack, unspecified
'G540', #Brachial plexus disorders
'G542', #Cervical root disorders, not elsewhere classified
'G5600', #Carpal tunnel syndrome, unspecified upper limb
'G5601', #Carpal tunnel syndrome, right upper limb
'G5602', #Carpal tunnel syndrome, left upper limb
'G5620', #Lesion of ulnar nerve, unspecified upper limb
'G5790', #Unspecified mononeuropathy of unspecified lower limb
'G589', #Mononeuropathy, unspecified
'G609', #Hereditary and idiopathic neuropathy, unspecified
'G629', #Polyneuropathy, unspecified
'G8190', #Hemiplegia, unspecified affecting unspecified side
'G8191', #Hemiplegia, unspecified affecting right dominant side
'G8194', #Hemiplegia, unspecified affecting left nondominant side
'G8220', #Paraplegia, unspecified
'G8222', #Paraplegia, incomplete
'G8250', #Quadriplegia, unspecified
'G894', #Chronic pain syndrome
'G9520', #Unspecified cord compression
'G959', #Disease of spinal cord, unspecified
'I6789', #Other cerebrovascular disease
'I69354', #Hemiplga following cerebral infrc affecting left nondom side
'I69848', #NA
'I739', #Peripheral vascular disease, unspecified
'M21339', #Wrist drop, unspecified wrist
'M21371', #Foot drop, right foot
'M21372', #Foot drop, left foot
'M436', #Torticollis
'M530', #Cervicocranial syndrome
'M531', #Cervicobrachial syndrome
'M533', #Sacrococcygeal disorders, not elsewhere classified
'M5382', #Other specified dorsopathies, cervical region
'M5386', #Other specified dorsopathies, lumbar region
'M539', #Dorsopathy, unspecified
'M5410', #Radiculopathy, site unspecified
'M5412', #Radiculopathy, cervical region
'M5413', #Radiculopathy, cervicothoracic region
'M5414', #Radiculopathy, thoracic region
'M5415', #Radiculopathy, thoracolumbar region
'M5416', #Radiculopathy, lumbar region
'M5417', #Radiculopathy, lumbosacral region
'M5430', #Sciatica, unspecified side
'M5431', #Sciatica, right side
'M5432', #Sciatica, left side
'M5440', #Lumbago with sciatica, unspecified side
'M5441', #Lumbago with sciatica, right side
'M5442', #Lumbago with sciatica, left side
'M5481', #Occipital neuralgia
'M792', #Neuralgia and neuritis, unspecified
'K8020', #Calculus of gallbladder w/o cholecystitis w/o obstruction
'N200', #Calculus of kidney
'N281', #Cyst of kidney, acquired
'N319', #Neuromuscular dysfunction of bladder, unspecified
'R32', #Unspecified urinary incontinence
'R339', #Retention of urine, unspecified
'D638', #Anemia in other chronic diseases classified elsewhere
'D649', #Anemia, unspecified
'D696', #Thrombocytopenia, unspecified
'D72829', #Elevated white blood cell count, unspecified
'R2689', #Other abnormalities of gait and mobility
'R269', #Unspecified abnormalities of gait and mobility
'R634', #Abnormal weight loss
'R260', #Ataxic gait
'R261', #Paralytic gait
'R936', #Abnormal findings on diagnostic imaging of limbs
'R937' #Abnormal findings on diagnostic imaging of prt ms sys
)))
# Procedure codes:
pr_codes_icd9 <- c()
pr_codes_icd10 <- c()
pr_codes_cpt <- c()
# Medication codes
rx_codes <- c()
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