## Codes for stroke
# Description:
desc <- "Stroke"
# Diagnosis codes:
# tmp <- read_csv("~/Documents/GitHub/delay_dx/params/ssd_codes/stroke2_new/ssd_codes.csv")
#
# tmp2 <- tmp %>%
# filter(icd_version == 9) %>%
# distinct(code = icd_codes) %>%
# left_join(mutate(icd::icd9cm_hierarchy,code=as.character(code))) %>%
# distinct(code,desc=short_desc)
#
# cat(paste0("'",tmp2$code,"',", " #",tmp2$desc),sep="\n")
#
# tmp2 <- tmp %>%
# filter(icd_version == 10) %>%
# distinct(code = icd_codes) %>%
# left_join(mutate(icd::icd10cm2019,code=as.character(code))) %>%
# distinct(code,desc=short_desc)
#
# cat(paste0("'",tmp2$code,"',", " #",tmp2$desc),sep="\n")
icd9_codes <- as.character(c('38600', #Meniere's disease NOS
'38601', #Actv Meniere,cochlvestib
'38602', #Active Meniere, cochlear
'38603', #Actv Meniere, vestibular
'38604', #Inactive Meniere's dis
'38610', #Peripheral vertigo NOS
'38611', #Benign parxysmal vertigo
'38612', #Vestibular neuronitis
'38619', #Peripheral vertigo NEC
'3862', #Central origin vertigo
'38630', #Labyrinthitis NOS
'38631', #Serous labyrinthitis
'38632', #Circumscri labyrinthitis
'38633', #Suppurativ labyrinthitis
'38634', #Toxic labyrinthitis
'38635', #Viral labyrinthitis
'38640', #Labyrinthine fistula NOS
'38641', #Round window fistula
'38642', #Oval window fistula
'38643', #Semicircul canal fistula
'38648', #Labyrinth fistula comb
'38650', #Labyrinthine dysfunc NOS
'38651', #Hypract labyrinth unilat
'38652', #Hyperact labyrinth bilat
'38653', #Hypoact labyrinth unilat
'38654', #Hypoact labyrinth bilat
'38655', #Loss labyrn react unilat
'38656', #Loss labyrin react bilat
'38658', #Labyrinthine dysfunc NEC
'3868', #Disorders labyrinth NEC
'3869', #Vertiginous synd NOS
'7804', #Dizziness and giddiness
'38000', #Perichondritis pinna NOS
'38001', #Ac perichondritis pinna
'38002', #Chr perichondritis pinna
'38003', #Chondritis of pinna
'38010', #Infec otitis externa NOS
'38011', #Acute infection of pinna
'38012', #Acute swimmers' ear
'38013', #Ac infect extern ear NEC
'38014', #Malignant otitis externa
'38015', #Chr mycot otitis externa
'38016', #Chr inf otit externa NEC
'38021', #Cholesteatoma extern ear
'38022', #Acute otitis externa NEC
'38023', #Chr otitis externa NEC
'38030', #Disorder of pinna NOS
'38031', #Hematoma auricle/pinna
'38032', #Acq deform auricle/pinna
'38039', #Noninfect dis pinna NEC
'3804', #Impacted cerumen
'38050', #Acq stenos ear canal NOS
'38051', #Stenosis ear d/t trauma
'38052', #Stenosis ear d/t surgery
'38053', #Stenosis ear d/t inflam
'38081', #Exostosis ext ear canal
'38089', #Dis external ear NEC
'3809', #Dis external ear NOS
'400', #NA
'38401', #Bullous myringitis
'38409', #Acute myringitis NEC
'3841', #Chronic myringitis
'38530', #Cholesteatoma NOS
'38531', #Cholesteatoma of attic
'38532', #Cholesteatoma middle ear
'38533', #Cholestma mid ear/mstoid
'38535', #Diffuse cholesteatosis
'38582', #Cholesterin granuloma
'38583', #Foreign body middle ear
'38589', #Dis mid ear/mastoid NEC
'3859', #Dis mid ear/mastoid NOS
'38800', #Degen/vascul dis ear NOS
'38801', #Presbyacusis
'38802', #Trans ischemic deafness
'38810', #Noise effect-ear/NOS
'38811', #Acoustic trauma
'38812', #Hearing loss d/t noise
'3882', #Sudden hearing loss NOS
'38830', #Tinnitus NOS
'38831', #Subjective tinnitus
'38832', #Objective tinnitus
'38840', #Abn auditory percept NOS
'38841', #Diplacusis
'38842', #Hyperacusis
'38843', #Impairm auditory discrim
'38844', #Auditory recruitment
'38845', #Acq auditory process dis
'3885', #Acoustic nerve disorders
'38860', #Otorrhea NOS
'38861', #Cerebrosp fluid otorrhea
'38869', #Otorrhea NEC
'38870', #Otalgia NOS
'38871', #Otogenic pain
'38872', #Referred pain of ear
'3888', #Disorders of ear NEC
'3889', #Disorder of ear NOS
'38900', #Conduct hearing loss NOS
'38901', #Conduc hear loss ext ear
'38902', #Conduct hear loss tympan
'38903', #Conduc hear loss mid ear
'38904', #Cond hear loss inner ear
'38905', #Condctv hear loss,unilat
'38906', #Condctv hear loss, bilat
'38908', #Cond hear loss comb type
'38910', #Sensorneur hear loss NOS
'38911', #Sensry hearng loss,bilat
'38912', #Neural hearng loss,bilat
'38913', #Neural hear loss, unilat
'38914', #Central hearing loss
'38915', #Sensorneur hear loss uni
'38916', #Sensoneur hear loss asym
'38917', #Sensory hear loss,unilat
'38918', #Sensonrl hear loss,bilat
'3892', #Mixed conductive and sensorineural hearing loss
'38920', #Mixed hearing loss NOS
'38921', #Mixed hearing loss,unilt
'38922', #Mixed hearing loss,bilat
'3897', #Deaf, nonspeaking NEC
'3898', #Hearing loss NEC
'3899', #Hearing loss NOS
'V412', #Problems with hearing
'V413', #Ear problems NEC
'V4985', #Dual sensory impairment
'V532', #Adjustment hearing aid
'V721', #Examination of ears and hearing
'V7211', #Hearing exam-fail screen
'V7212', #Hearing conservatn/trtmt
'V7219', #Exam ears & hearing NEC
'33900', #Cluster headache syn NOS
'33901', #Episodc cluster headache
'33902', #Chronic cluster headache
'33903', #Episdc paroxyml hemicran
'33904', #Chr paroxysml hemicrania
'3460', #Migraine with aura
'34600', #Mgrn w aura wo ntrc mgrn
'34601', #Mgrn w aura w ntrc mgrn
'34602', #Mgrn w aur wo ntrc mgrn
'34603', #Mgrn w aura w ntrc mgrn
'3461', #Migraine without aura
'34610', #Mgrn wo aura wo ntrc mgr
'34611', #Mgrn wo aura w ntrc mgrn
'34612', #Mgrn wo aura wo ntrc mgr
'34613', #Mgrn wo aura w ntrc mgrn
'3462', #Variants of migraine, not elsewhere classified
'34620', #Vrnt mgrn wo ntr mgr NEC
'34621', #Vrnt mgrn w ntrc mgr NEC
'34622', #Var mgr NEC wo ntc mgr
'34623', #Var mgrn NEC w ntrc mgr
'34630', #Hmplg mgr wo ntrc wo st
'34631', #Hmplg mgrn w ntrc wo st
'34632', #Hemplg mgr wo ntrc w st
'34633', #Hmplg mgrn w ntrc w st
'34640', #Menst mgr wo ntrc wo st
'34641', #Menstl mgrn w ntrc wo st
'34642', #Menstl mgr wo ntrc w st
'34643', #Menstl mgrn w ntrc w st
'34650', #Prst aura wo inf/ntr/st
'34651', #Prs ara w ntr wo inf/st
'34652', #Prs ara wo inf/ntr w st
'34653', #Prs ara wo inf w ntr/st
'34670', #Ch mgr wo ar wo nt wo st
'34671', #Ch mgr wo ara w nt wo st
'34672', #Ch mgr wo ara wo nt w st
'34673', #Ch mgr wo ara w ntr w st
'3468', #Other forms of migraine
'34680', #Othr migrne wo ntrc mgrn
'34681', #Othr migrne w ntrc mgrne
'34682', #Oth mgr wo ntrc w st mgr
'34683', #Oth mgr w ntrc w st mgr
'3469', #Migraine, unspecified
'34690', #Migrne unsp wo ntrc mgrn
'34691', #Mgrn unsp w ntrc mgr std
'34692', #Mgr NOS wo ntrc w st mgr
'34693', #Mgrn NOS w ntrc w st mgr
'33905', #Shrt lst uni nral hdache
'33909', #Trigem autonmc cephl NEC
'33910', #Tension headache NOS
'33911', #Episdic tension headache
'33912', #Chronic tension headache
'33920', #Post-trauma headache NOS
'33921', #Ac post-trauma headache
'33922', #Chr post-trauma headache
'3393', #Drug induce headache NEC
'33941', #Hemicrania continua
'33942', #New daily pers headache
'33943', #Prim thnderclap headache
'33944', #Comp headache synd NEC
'33981', #Hypnic headache
'33982', #Headache w sex activity
'33983', #Primary cough headache
'33984', #Prim exertion headache
'33985', #Prim stabbing headache
'33989', #Headache syndrome NEC
'7840' #Headache
))
icd10_codes <- as.character((c('H61009', #Unspecified perichondritis of external ear, unspecified ear
'H61019', #Acute perichondritis of external ear, unspecified ear
'H61029', #Chronic perichondritis of external ear, unspecified ear
'H61039', #Chondritis of external ear, unspecified ear
'H6000', #Abscess of external ear, unspecified ear
'H6010', #Cellulitis of external ear, unspecified ear
'H60319', #Diffuse otitis externa, unspecified ear
'H60329', #Hemorrhagic otitis externa, unspecified ear
'H60399', #Other infective otitis externa, unspecified ear
'H6193', #Disorder of external ear, unspecified, bilateral
'H60339', #Swimmer's ear, unspecified ear
'H6240', #Otitis externa in oth diseases classd elswhr, unsp ear
'H6020', #Malignant otitis externa, unspecified ear
'H628X1', #Oth disorders of r ext ear in diseases classd elswhr
'H6040', #Cholesteatoma of external ear, unspecified ear
'H60509', #Unsp acute noninfective otitis externa, unspecified ear
'H60519', #Acute actinic otitis externa, unspecified ear
'H60529', #Acute chemical otitis externa, unspecified ear
'H60539', #Acute contact otitis externa, unspecified ear
'H60549', #Acute eczematoid otitis externa, unspecified ear
'H60559', #Acute reactive otitis externa, unspecified ear
'H60599', #Other noninfective acute otitis externa, unspecified ear
'H6060', #Unspecified chronic otitis externa, unspecified ear
'H608X1', #Other otitis externa, right ear
'H6090', #Unspecified otitis externa, unspecified ear
'H61109', #Unspecified noninfective disorders of pinna, unspecified ear
'H61129', #Hematoma of pinna, unspecified ear
'H61119', #Acquired deformity of pinna, unspecified ear
'H61199', #Noninfective disorders of pinna, unspecified ear
'H6123', #Impacted cerumen, bilateral
'H61309', #Acquired stenosis of external ear canal, unsp, unsp ear
'H61399', #Other acquired stenosis of external ear canal, unsp ear
'H61319', #Acquired stenosis of ext ear canal sec to trauma, unsp ear
'H61329', #Acq stenos of ext ear canal sec to inflam & infct, unsp ear
'H61819', #Exostosis of external canal, unspecified ear
'H61899', #Other specified disorders of external ear, unspecified ear
'H73019', #Bullous myringitis, unspecified ear
'H73099', #Other acute myringitis, unspecified ear
'H7310', #Chronic myringitis, unspecified ear
'H7193', #Unspecified cholesteatoma, bilateral
'H7103', #Cholesteatoma of attic, bilateral
'H7113', #Cholesteatoma of tympanum, bilateral
'H7440', #Polyp of middle ear, unspecified ear
'H7123', #Cholesteatoma of mastoid, bilateral
'H7133', #Diffuse cholesteatosis, bilateral
'H748X9', #Oth disrd of middle ear and mastoid, unspecified ear
'H7490', #Unsp disorder of middle ear and mastoid, unspecified ear
'H8109', #Meniere's disease, unspecified ear
'H81399', #Other peripheral vertigo, unspecified ear
'H8113', #Benign paroxysmal vertigo, bilateral
'H8123', #Vestibular neuronitis, bilateral
'H81319', #Aural vertigo, unspecified ear
'H8149', #Vertigo of central origin, unspecified ear
'H8309', #Labyrinthitis, unspecified ear
'H8319', #Labyrinthine fistula, unspecified ear
'H832X9', #Labyrinthine dysfunction, unspecified ear
'H818X9', #Other disorders of vestibular function, unspecified ear
'H829', #Vertiginous syndromes in diseases classd elswhr, unsp ear
'H838X9', #Other specified diseases of inner ear, unspecified ear
'H8193', #Unspecified disorder of vestibular function, bilateral
'H8393', #Unspecified disease of inner ear, bilateral
'H93099', #Unsp degenerative and vascular disorders of unspecified ear
'H9113', #Presbycusis, bilateral
'H93019', #Transient ischemic deafness, unspecified ear
'H833X9', #Noise effects on inner ear, unspecified ear
'H918X9', #Other specified hearing loss, unspecified ear
'H9123', #Sudden idiopathic hearing loss, bilateral
'H9319', #Tinnitus, unspecified ear
'H93249', #Temporary auditory threshold shift, unspecified ear
'H93299', #Other abnormal auditory perceptions, unspecified ear
'H93229', #Diplacusis, unspecified ear
'H93239', #Hyperacusis, unspecified ear
'H93219', #Auditory recruitment, unspecified ear
'H933X9', #Disorders of unspecified acoustic nerve
'H9210', #Otorrhea, unspecified ear
'G960', #Cerebrospinal fluid leak
'H9220', #Otorrhagia, unspecified ear
'H9209', #Otalgia, unspecified ear
'H938X9', #Other specified disorders of ear, unspecified ear
'H9393', #Unspecified disorder of ear, bilateral
'H902', #Conductive hearing loss, unspecified
'H9011', #Condctv hear loss, uni, right ear, w unrestr hear cntra side
'H9012', #Condctv hear loss, uni, left ear, w unrestr hear cntra side
'H900', #Conductive hearing loss, bilateral
'H905', #Unspecified sensorineural hearing loss
'H903', #Sensorineural hearing loss, bilateral
'H9041', #Snsrnrl hear loss, uni, right ear, w unrestr hear cntra side
'H9042', #Snsrnrl hear loss, uni, left ear, w unrestr hear cntra side
'H908', #Mixed conductive and sensorineural hearing loss, unspecified
'H9071', #Mix cndct/snrl hear loss,uni,r ear,w unrestr hear cntra side
'H9072', #Mix cndct/snrl hear loss,uni,l ear,w unrestr hear cntra side
'H906', #Mixed conductive and sensorineural hearing loss, bilateral
'H913', #Deaf nonspeaking, not elsewhere classified
'H9190', #Unspecified hearing loss, unspecified ear
'R42', #Dizziness and giddiness
'Z974', #Presence of external hearing-aid
'H9390', #Unspecified disorder of ear, unspecified ear
'Z7382', #Dual sensory impairment
'Z461', #Encounter for fitting and adjustment of hearing aid
'Z01110', #Encounter for hearing exam following failed hear screening
'Z0112', #Encounter for hearing conservation and treatment
'Z0110', #Encounter for exam of ears and hearing w/o abnormal findings
'Z01118', #Encntr for exam of ears and hearing w oth abnormal findings
'G44009', #Cluster headache syndrome, unspecified, not intractable
'G44019', #Episodic cluster headache, not intractable
'G44029', #Chronic cluster headache, not intractable
'G44039', #Episodic paroxysmal hemicrania, not intractable
'G44049', #Chronic paroxysmal hemicrania, not intractable
'G44059', #Shrt lst unil nerlgif hdache w cnjnct inject/tear, not ntrct
'G44099', #Other trigeminal autonomic cephalgias (TAC), not intractable
'G44209', #Tension-type headache, unspecified, not intractable
'G44219', #Episodic tension-type headache, not intractable
'G44221', #Chronic tension-type headache, intractable
'G44229', #Chronic tension-type headache, not intractable
'G44309', #Post-traumatic headache, unspecified, not intractable
'G44319', #Acute post-traumatic headache, not intractable
'G44329', #Chronic post-traumatic headache, not intractable
'G4441', #Drug-induced headache, not elsewhere classified, intractable
'G4451', #Hemicrania continua
'G4452', #New daily persistent headache (NDPH)
'G4453', #Primary thunderclap headache
'G4459', #Other complicated headache syndrome
'G4481', #Hypnic headache
'G4482', #Headache associated with sexual activity
'G4483', #Primary cough headache
'G4484', #Primary exertional headache
'G4485', #Primary stabbing headache
'G4489', #Other headache syndrome
'G43109', #Migraine with aura, not intractable, w/o status migrainosus
'G43119', #Migraine with aura, intractable, without status migrainosus
'G43101', #Migraine with aura, not intractable, with status migrainosus
'G43111', #Migraine with aura, intractable, with status migrainosus
'G43009', #Migraine w/o aura, not intractable, w/o status migrainosus
'G43019', #Migraine w/o aura, intractable, without status migrainosus
'G43001', #Migraine w/o aura, not intractable, with status migrainosus
'G43011', #Migraine without aura, intractable, with status migrainosus
'G43809', #Other migraine, not intractable, without status migrainosus
'G43A0', #Cyclical vomiting, not intractable
'G43B0', #Ophthalmoplegic migraine, not intractable
'G43C0', #Periodic headache syndromes in chld/adlt, not intractable
'G43D0', #Abdominal migraine, not intractable
'G43819', #Other migraine, intractable, without status migrainosus
'G43A1', #Cyclical vomiting, intractable
'G43B1', #Ophthalmoplegic migraine, intractable
'G43C1', #Periodic headache syndromes in child or adult, intractable
'G43D1', #Abdominal migraine, intractable
'G43801', #Other migraine, not intractable, with status migrainosus
'G43811', #Other migraine, intractable, with status migrainosus
'G43409', #Hemiplegic migraine, not intractable, w/o status migrainosus
'G43419', #Hemiplegic migraine, intractable, without status migrainosus
'G43401', #Hemiplegic migraine, not intractable, w status migrainosus
'G43411', #Hemiplegic migraine, intractable, with status migrainosus
'G43829', #Menstrual migraine, not intractable, w/o status migrainosus
'G43839', #Menstrual migraine, intractable, without status migrainosus
'G43821', #Menstrual migraine, not intractable, with status migrainosus
'G43831', #Menstrual migraine, intractable, with status migrainosus
'G43509', #Perst migrn aura w/o cereb infrc, not ntrct, w/o stat migr
'G43519', #Perst migraine aura w/o cerebral infrc, ntrct, w/o stat migr
'G43501', #Perst migraine aura w/o cereb infrc, not ntrct, w stat migr
'G43511', #Perst migraine aura w/o cerebral infrc, ntrct, w stat migr
'G43709', #Chronic migraine w/o aura, not intractable, w/o stat migr
'G43719', #Chronic migraine w/o aura, intractable, w/o stat migr
'G43701', #Chronic migraine w/o aura, not intractable, w stat migr
'G43711', #Chronic migraine w/o aura, intractable, w status migrainosus
'G43909', #Migraine, unsp, not intractable, without status migrainosus
'G43919', #Migraine, unsp, intractable, without status migrainosus
'G43901', #Migraine, unsp, not intractable, with status migrainosus
'G43911', #Migraine, unspecified, intractable, with status migrainosus
'G441', #Vascular headache, not elsewhere classified
'R51' #Headache
)))
# Procedure codes:
pr_codes_icd9 <- c()
pr_codes_icd10 <- c()
pr_codes_cpt <- c()
# Medication codes
rx_codes <- c()
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