pFilt: Particle filter function - runs model in steps between each...

In aaronm70/batMods: fitsSEIR

Description

Particle filter function - runs model in steps between each observed data point before using weighted re-sampling of model state at each step to start next

Usage

pFilt(
  n,
  iState,
  stepFun,
  obsData,
  prms,
  resM = F,
  cluster = F,
  assump,
  likelihoodFunc,
  full = F,
  mat = F,
  birthType
)

Arguments

n	number of particles
iState	function for calculating initial state of particles
stepFun	function for taking parmeters and time point, running model in steps and outputting model state
obsData	observed data to fit model to
prms	model parameters
resM	True/False whether to output likelihood values or results of simulation for plotting figures
cluster	T/F if true, using the cluster if false, run locally
likeFunc	likelihood function - obsolete

Value

if resM = F log likelihood value, if resM = T mean results of simulation

aaronm70/batMods documentation built on Sept. 8, 2021, 7:05 a.m.