chooseModule: Choosing dense modules

In aaronwolen/dmGWAS2: A fork of EW_dmGWAS

Description

This function will choose the top modules specified by users for downstream analyses. Sub-network can also be plotted if plot=TRUE.

Usage

chooseModule(res.list, top = 0.01, plot = FALSE)

Arguments

res.list	The results from function dms
top	Either a percentage (<1) or an integer (>=1)
plot	To plot the sub-network or not

Details

The parameter top could be either a percentage (<1) or an integer (>=1). For example, if top is 0.01, the top 1% modules will be chosen; if top is 50, the top 50 modules will be chosen.

Value

A list contains both the chosen modules and the sub-network constructed from the chosen modules.

See Also

dms

Examples

## Not run: 
res.list <- dms(network, geneweight, expr1, expr2)

## End(Not run)

aaronwolen/dmGWAS2 documentation built on May 10, 2019, 4:04 a.m.