arle: Array relative log expression
In aaronwolen/mimager: mimager: The Microarray Imager

Description Usage Arguments Value See Also Examples

View source: R/transformations.r

The relative log expression (RLE) quantifies the extent to which each sample in a dataset differs from a "reference" sample, which represents each probe's median value across all samples.

1	arle(x, log2 = TRUE, normalize = TRUE)

`x`	a three-dimensional `array` of matrices
`log2`	should values be $log_2$ transformed
`normalize`	should values be quantile normalized

an array with the same dimensions as x

RLE

Other array transformations: arank()

# microarray visualization
if (require(affydata, quietly = TRUE)) {
  data("Dilution", package = "affydata")
  x <- arle(marray(Dilution, transpose = TRUE))
}