mimager: mimager: The Microarray Imager

In aaronwolen/mimager: mimager: The Microarray Imager

Description

mimager simplifies the creation of microarray images (sometimes called "pseudo-images") for the purpose of identifying problematic regional aberrations. Notable features include support for many of Bioconductor's core microarray data structures, providng compatibility with a variety of common microarray platforms, and the ability to visualize multiple microarrays simultaneously.

Details

The following Bioconductor microarray data structures are currently supported:

• AffyBatch-class for Affymetrix GeneChip probe level data

• PLMset-class for probe-level linear models fitted to Affymetrix GeneChip probe level data

• FeatureSetExtensions-class for storing Expression/Exon/SNP data from a variety of oligonucleotide platforms

• oligoPLM-class for probe-level linear models fitted to any of the FeatureSet-like classes

aaronwolen/mimager documentation built on Dec. 9, 2019, 9:57 p.m.