ctrl_vox_create: Control Voxel Create

In abdhigithub/hatch: Histogram-matching After Tissue Classification to a Healthy control

Description

This function creates a mask to obtain ideal tissue to create landmarks for histogram matching

Usage

ctrl_vox_create(wm_pve, gm_pve, csf_pve, threshold = 0.99, samples = c(1500,
  1200, 1000), outfile = NULL)

Arguments

wm_pve	White Matter partial volume probabilty map or path
gm_pve	Grey Matter partial volume probabilty map or path
csf_pve	CSF partial volume probabilty map or path
threshold	cutoff probabilty value to choose good quality tissues, default = 0.99
samples	vector of size 3 determining the subsample sizes for White Matter, Grey Matter and CSF respectively, default =c(1500,1200,1000)
outfile	outputs a mask of selected controls voxels to create intensity landmarks

Value

mask image of voxels where total number of 1's is sum(samples)

abdhigithub/hatch documentation built on May 15, 2019, 3:14 p.m.