Files in abelew/stampr
Perform the STAMP analysis
DESCRIPTION
LICENSE
Makefile
NAMESPACE
R/01_stampr.r
R/calculate_nb.r
R/exclude_samples.r
R/filter_given_reference.r
R/filter_tags.r
R/plot_calibration.r
R/plot_read_density.r
R/predict_cfu.r
R/preprocess_reads.r
R/read_csv_tags.r
R/read_idx.r
R/read_qiime_otus.r
R/rtisan.r
README.md
inst/doc/stamp_process.R
inst/doc/stamp_process.Rmd
inst/doc/stamp_process.html
inst/extdata/07ca_r1.sh
inst/extdata/all_samples.xlsx
inst/extdata/count_tags.pl
inst/extdata/original_bigmatrix.csv
inst/extdata/original_qiime_tally.csv
inst/extdata/rtisan_calibration_curve_ordered_frequencies.csv
inst/reference/reference.pdf
man/calculate_nb.Rd
man/calculate_resiliency.Rd
man/convert_cutoffs.Rd
man/dopar.Rd
man/exclude_samples.Rd
man/filter_given_reference.Rd
man/filter_given_reference_list.Rd
man/filter_tags.Rd
man/filter_topn_tags.Rd
man/gather_tags_per_replicate.Rd
man/get_bottom_vector.Rd
man/get_interval_nb.Rd
man/make_frequency_df.Rd
man/nb_from_tags.Rd
man/nb_minimum_search.Rd
man/pipe.Rd
man/plot_calibration.Rd
man/plot_read_density.Rd
man/predict_cfu.Rd
man/preprocess_stamp.Rd
man/read_csv_tags.Rd
man/read_qiime_otus.Rd
man/read_tags.Rd
man/rtisan_nb_from_tags.Rd
man/rtisan_nr_nb.Rd
man/sorted_nb.Rd
man/stampr.Rd
man/vector_proportion.Rd
tests/testthat.R
tests/testthat/test_001_stampr.R
vignettes/modified_metadata-20210105.xlsx
vignettes/stamp_process.Rmd
vignettes/stamp_process_csv.Rmd
vignettes/stamp_process_csv_rtisan.Rmd
vignettes/stampr_rtisan_rewritten.Rmd
