read_qiime_otus: Create data structures similar to read_idx using qiime otus.

In abelew/stampr: Perform the STAMP analysis

Create data structures similar to read_idx using qiime otus.

Description

There are some problems with this implementation still, primarily because the version of qiime does not helpfully give the tag sequences. I have found some ways around this, but since I don't really like that implementation I haven't finished it yet.

Usage

read_qiime_otus(
  metadata,
  otu_column = "qiime_otus",
  xref_sequence = FALSE,
  trimmed_column = "trimmed_reads",
  output = NULL
)

Arguments

metadata	Sample metadata.
output	Write the matrix to this file, if provided.
column	Metadata column containing the qiime output.

abelew/stampr documentation built on April 14, 2022, 5:03 a.m.