get_interaction_from_ORA: Get interaction from ORA enrichment analysis

In abodein/netOmics: Multi-Omics (time-course) network-based integration and interpretation

Get interaction from ORA enrichment analysis

Description

Returns results of an ORA analysis as an interaction graph

Usage

get_interaction_from_ORA(
  query,
  sources = "GO",
  organism = "hsapiens",
  signif.value = TRUE
)

Arguments

query	a vector (or a list) of character with the ID to perform the ORA analysis
sources	(optional) a character in (GO, KEGG, REAC, TF, MIRNA, CORUM, HP, HPA, WP)
organism	(optional) a character (default = 'hsapiens')
signif.value	(optional) a logical, default = ”

Value

a graph object (or list of graph) containing the interaction between the query and the target terms.

See Also

gost gconvert

Examples

query <- c('IL15', 'CDHR5', 'TGFA', 'C4B')
get_interaction_from_ORA(query,
                         sources = 'GO')

query <- list('All' = c('IL15', 'CDHR5', 'TGFA', 'C4B'),
              'c1' = c('IL15', 'CDHR5', 'TGFA'))
get_interaction_from_ORA(query,
                         sources = 'GO')

abodein/netOmics documentation built on Oct. 20, 2024, 9:25 a.m.