hmp_T2D: hmp_T2D

In abodein/netOmics: Multi-Omics (time-course) network-based integration and interpretation

hmp_T2D

Description

This dataset contained a list of data.frames. Raw data is a subset of the data available at: https://github.com/aametwally/ipop_seasonal The package will be illustrated on longitudinal MO dataset to study the seasonality of MO expression in patients with diabetes (see netOmics vignette). In this subset we focused on a single individual with 7 timepoints. Briefly 6 different omics were sampled (RNA, proteins, cytokines, gut microbiome, metabolites and clinical variables).

Usage

hmp_T2D

Format

a list of data.frame

raw

data.frame, raw data

modelled

data.frame, modelled data

getCluster.res

data.frame, clustering results from timeOmics

getCluster.sparse.res

data.frame, sparse clustering results from timeOmics

interaction.biogrid

data.frame, interactions from BioGRID database

interaction.TF

data.frame, TFome interactions from TTrust and TF2DNA

medlineranker.res.df

data.frame, medlineRanker enrichment results

graph.gut

list of igraph, gut graph obtained with SparCC

abodein/netOmics documentation built on April 16, 2024, 2:59 p.m.