matplot.geneJAM: Adjacency matrix plot for a cv.geneJAM object

In abuchardt/EdGwas: Joint regression Analysis of Multiple traits based on GENEtic relationships

Adjacency matrix plot for a cv.geneJAM object

Description

Adjacency matrix plot for a cv.geneJAM object

Usage

matplot.geneJAM(
  x,
  s = "rho.min",
  A = NULL,
  col = "darkgrey",
  col.border = "#D95F02",
  bty = "n",
  xlab = NULL,
  ylab = NULL,
  axes = TRUE,
  frame.plot = FALSE,
  reorder = FALSE,
  ...
)

Arguments

x	Fitted "geneJAM" object.
s	Value(s) of the penalty parameters rho for which the corresponding adjacency matrix is plotted. Default is rho.min.
A	True adjacency matrix (optional).
col	Color(s) to fill or shade the non-zero entries with. The default is col = "lightgrey".
col.border	Color for rectangle border(s). The default is col.border = "#D95F02".
bty	A character string which determine the type of box which is drawn about plots. Default is "n" which suppresses the box.
xlab	A label for the x axis, defaults to 1:nouts
ylab	A label for the y axis, defaults to 1:nouts
axes	A logical value indicating whether axes should be drawn on the plot.
frame.plot	A logical value indicating whether a box should be drawn around the plot.
reorder	A logical value indicating whether rows and columns of adjacency matrix should be ordered according to clusters.
...	Other paramters to be passed through to plotting functions.

Details

Plots are produced, and nothing is returned.

abuchardt/EdGwas documentation built on Nov. 28, 2022, 11:49 a.m.