API for acidgenomics/AcidPlots
Acid Genomics Plot Functions and Themes

Global functions
!! Man page
!!! Man page
.bindReducedDims Source code
.data Man page
.detectMapping Source code
.env Man page
.fetchGeneData Source code
.fetchReductionData Source code
.fetchReductionExpressionData Source code
.genePoint Source code
.gradientPalette Source code
.group Source code
.hclust Source code
.hideLegendsInPlotlist Source code
.minMax Source code
.percentAbove Source code
.pheatmapAnnotations Source code
.pheatmapArgs Source code
.pheatmapColorPalette Source code
.plotCountsFacet Source code
.plotCountsWide Source code
.plotQcMetric Source code
.plotQcScatterplot Source code
.preparePalette Source code
.quantileBreaks Source code
.rgb Source code
.scaleCols Source code
.scaleMatrix Source code
.scaleRows Source code
AcidPlots Man page
AcidPlots-package Man page
AcidPlotsTestsUrl Man page
acid_discrete_coord_flip Man page
acid_geom_abline Man page
acid_geom_bar Man page
acid_geom_label Man page
acid_geom_label_average Man page
acid_geom_label_repel Man page
acid_pretty_breaks Man page
acid_scale_color_continuous Man page
acid_scale_color_discrete Man page
acid_scale_color_synesthesia_c Man page
acid_scale_color_synesthesia_d Man page
acid_scale_fill_continuous Man page
acid_scale_fill_discrete Man page
acid_scale_fill_synesthesia_c Man page
acid_scale_fill_synesthesia_d Man page
acid_scale_y_continuous_nopad Man page
acid_theme_dark Man page
acid_theme_dracula Man page
acid_theme_light Man page
aes Man page
after_stat Man page
autoScale Man page
blueYellow Man page Source code
darkPalette Man page
draculaPalette Man page
ggplot Man page
ggsave Man page
gradient Man page Source code
iOSDarkPalette Man page
iOSLightPalette Man page
lightPalette Man page
log_breaks Man page
macOSDarkPalette Man page
macOSLightPalette Man page
matchLabels Man page Source code
palettes Man page
percent Man page
plotBarcodeRanks Man page
plotBarcodeRanks,SingleCellExperiment-method Man page
plotCellCounts Man page
plotCellCounts,SingleCellExperiment-method Man page
plotCellCountsPerCluster Man page
plotCellCountsPerCluster,SingleCellExperiment-method Man page
plotCellTypesPerCluster Man page
plotCellTypesPerCluster,SingleCellExperiment,KnownMarkers-method Man page
plotCorrelation Man page
plotCorrelation,DFrame-method Man page
plotCorrelation,Matrix-method Man page
plotCorrelation,SummarizedExperiment-method Man page
plotCorrelation,data.frame-method Man page
plotCorrelation,matrix-method Man page
plotCorrelationHeatmap Man page
plotCorrelationHeatmap,SingleCellExperiment-method Man page
plotCorrelationHeatmap,SummarizedExperiment-method Man page
plotCounts Man page
plotCounts,SingleCellExperiment-method Man page
plotCounts,SummarizedExperiment-method Man page
plotCountsCorrelation Man page
plotCountsCorrelation,matrix,matrix-method Man page
plotCountsCorrelationHeatmap Man page
plotCountsCorrelationHeatmap,matrix,matrix-method Man page
plotCountsPerBiotype Man page
plotCountsPerBiotype,SingleCellExperiment-method Man page
plotCountsPerBiotype,SummarizedExperiment-method Man page
plotCountsPerBroadClass Man page
plotCountsPerBroadClass,SingleCellExperiment-method Man page
plotCountsPerBroadClass,SummarizedExperiment-method Man page
plotCountsPerCell Man page
plotCountsPerCell,SingleCellExperiment-method Man page
plotCountsPerFeature Man page
plotCountsPerFeature,SingleCellExperiment-method Man page
plotCountsPerFeature,SummarizedExperiment-method Man page
plotCountsVsFeatures Man page
plotCountsVsFeatures,SingleCellExperiment-method Man page
plotDots Man page
plotDots,SingleCellExperiment-method Man page
plotFeature Man page
plotFeature,SingleCellExperiment-method Man page
plotFeaturesDetected Man page
plotFeaturesDetected,SingleCellExperiment-method Man page
plotFeaturesDetected,SummarizedExperiment-method Man page
plotFeaturesPerCell Man page
plotFeaturesPerCell,SingleCellExperiment-method Man page
plotGenderMarkers Man page
plotGenderMarkers,SingleCellExperiment-method Man page
plotGenderMarkers,SummarizedExperiment-method Man page
plotHeatmap Man page
plotHeatmap,SingleCellExperiment-method Man page
plotHeatmap,SummarizedExperiment-method Man page
plotKnownMarkers Man page
plotKnownMarkers,SingleCellExperiment,KnownMarkers-method Man page
plotMarker Man page
plotMarker,SingleCellExperiment-method Man page
plotMitoRatio Man page
plotMitoRatio,SingleCellExperiment-method Man page
plotMitoVsCoding Man page
plotMitoVsCoding,SingleCellExperiment-method Man page
plotNovelty Man page
plotNovelty,SingleCellExperiment-method Man page
plotPca Man page
plotPca,SingleCellExperiment-method Man page
plotPca,SummarizedExperiment-method Man page
plotQc Man page
plotQc,SingleCellExperiment-method Man page
plotQc,SummarizedExperiment-method Man page
plotQuantileHeatmap Man page
plotQuantileHeatmap,SingleCellExperiment-method Man page
plotQuantileHeatmap,SummarizedExperiment-method Man page
plotReducedDim Man page
plotReducedDim,SingleCellExperiment-method Man page
plotStackedBarPlot Man page
plotStackedBarPlot,SingleCellExperiment-method Man page
plotSums Man page
plotSums,SummarizedExperiment-method Man page
plotTotalCounts Man page
plotTotalCounts,SingleCellExperiment-method Man page
plotTotalCounts,SummarizedExperiment-method Man page
plotTsne Man page
plotTsne,SingleCellExperiment-method Man page
plotUmap Man page
plotUmap,SingleCellExperiment-method Man page
plotUpset Man page
plotUpset,DFrame-method Man page
plotUpset,data.frame-method Man page
plotUpset,list-method Man page
plotUpset,matrix-method Man page
plotViolin Man page
plotViolin,SingleCellExperiment-method Man page
plotWaterfall Man page
plotWaterfall,DFrame-method Man page
plotWaterfall,SummarizedExperiment-method Man page
plotWaterfall,data.frame-method Man page
plotZerosVsDepth Man page
plotZerosVsDepth,SummarizedExperiment-method Man page
plot_annotation Man page
plot_layout Man page
pretty_breaks Man page
purpleOrange Man page Source code
reexports Man page
scale_colour_synesthesia_c Man page
scale_colour_synesthesia_d Man page
sym Man page
syms Man page
synesthesia Man page Source code
synesthesia_pal Man page
theme_set Man page
themes Man page
wrap_plots Man page
acidgenomics/AcidPlots documentation built on March 29, 2024, 9:27 a.m.