plotSums: Plot row or column sums

In acidgenomics/AcidPlots: Acid Genomics Plot Functions and Themes

Plot row or column sums

Description

Visualize row or column sums using empirical cumulative distribution function (ECDF) plot.

Usage

plotSums(object, ...)

## S4 method for signature 'SummarizedExperiment'
plotSums(
  object,
  MARGIN,
  assay = 1L,
  interestingGroups = NULL,
  labels = list(title = NULL, subtitle = NULL)
)

Arguments

object	Object.
MARGIN	integer(1-2). Dimension where the function will be applied. For a two-dimensional matrix: 1 indicates rows; 2 indicates columns; c(1, 2) indicates rows and columns.
assay	vector(1). Assay name or index position.
interestingGroups	character. Groups of interest to use for visualization. Corresponds to factors describing the columns of the object.
labels	list. ggplot2 labels. See ggplot2::labs() for details.
...	Additional arguments.

Value

ggplot.

Note

Updated 2023-08-10.

Examples

data(
    RangedSummarizedExperiment,
    package = "AcidTest"
)

## SummarizedExperiment ====
object <- RangedSummarizedExperiment
plotSums(object, MARGIN = 1L)
plotSums(object, MARGIN = 2L)

acidgenomics/AcidPlots documentation built on March 29, 2024, 9:27 a.m.