README.md

In acidgenomics/cBioPortalAnalysis: cBioPortal Analysis Utilities

cBioPortalAnalysis

Toolkit for performing queries on cBioPortal.

Installation

R method

## Currently unstable. Working on an update to fix this.
## > if (!requireNamespace("BiocManager", quietly = TRUE)) {
## >     install.packages("BiocManager")
## > }
## > install.packages(
## >     pkgs = "cBioPortalAnalysis",
## >     repos = c(
## >         "https://r.acidgenomics.com",
## >         BiocManager::repositories()
## >     )
## > )

Details

• RNA expression values
• Z-score normalization method

Currently using cgdsr internally, but am evaluating the new cBioPortalData package for inclusion in a future release.

acidgenomics/cBioPortalAnalysis documentation built on Jan. 10, 2024, 6:29 p.m.