API for acidgenomics/pipette
Pipette Biological Data In and Out of R

Global functions
.allNonNA Source code
.autoDecompress Source code
.biocPackageCache Source code
.digest Source code
.extToFileClass Source code
.getFunction Source code
.importMTXSidecar Source code
.listData Source code
.loadExistsError Source code
.loadRDA Source code
.loadRDS Source code
.returnImport Source code
BcbioCountsFile-class Man page
CSVFile-class Man page
CompressedGRangesList-class Man page
DataFrame Man page
DelimFile-class Man page
ExcelFile-class Man page
FASTAFile-class Man page
FASTQFile-class Man page
GMTFile-class Man page
GMXFile-class Man page
GRPFile-class Man page
GRanges Man page
GRanges-class Man page
GRangesList Man page
GRangesList-class Man page
JSONFile-class Man page
LinesFile-class Man page
MTXFile-class Man page
Matrix Man page
Matrix-class Man page
PZFXFile-class Man page
PipetteFile-class Man page
RDSFile-class Man page
RDataFile-class Man page
RioFile-class Man page
RtracklayerFile-class Man page
TSVFile-class Man page
TableFile-class Man page
YAMLFile-class Man page
as.DataFrame Man page
as.DataFrame,SimpleList-method Man page
as.DataFrame,list-method Man page
as.data.frame Man page
as.data.frame,IRanges-method Man page
as.data.frame,Matrix-method Man page
as.data.table Man page
as.data.table.DataFrame Man page
as.data.table.GenomicRanges Man page
as.data.table.IRanges Man page
as_tibble Man page
as_tibble.DataFrame Man page
as_tibble.GenomicRanges Man page
as_tibble.IRanges Man page
assignAndSaveData Man page Source code
atomize Man page
atomize,DataFrame-method Man page
atomize,Ranges-method Man page
atomize,data.frame-method Man page
cacheURL Man page Source code
checksums Man page
coerce Man page
coerce,DataFrame,data.table-method Man page
coerce,DataFrame,tbl_df-method Man page
coerce,GenomicRanges,data.table-method Man page
coerce,GenomicRanges,tbl_df-method Man page
coerce,IRanges,data.frame-method Man page
coerce,IRanges,data.table-method Man page
coerce,IRanges,tbl_df-method Man page
coerce,Matrix,DataFrame-method Man page
coerce,Matrix,data.frame-method Man page
coerce,data.frame,data.table-method Man page
coerce,data.frame,tbl_df-method Man page
coerce,data.table,DataFrame-method Man page
coerce,tbl_df,DataFrame-method Man page
column_to_rownames Man page
compress Man page
data.table Man page
decode Man page
decode,DataFrame-method Man page
decode,Ranges-method Man page
decompress Man page
defunct Man page
download Man page
droplevels Man page
droplevels,DataFrame-method Man page
droplevels,Ranges-method Man page
encode Man page
encode,DataFrame-method Man page
encode,Ranges-method Man page
export Man page
export,DataFrame-method Man page
export,GenomicRanges-method Man page
export,Matrix-method Man page
export,character-method Man page
export,data.frame-method Man page
export,matrix-method Man page
factorize Man page
factorize,DataFrame-method Man page
getJSON Man page Source code
getURL Man page
getURLDirList Man page Source code
import Man page
import,BcbioCountsFile-method Man page
import,DelimFile-method Man page
import,ExcelFile-method Man page
import,FASTAFile-method Man page
import,FASTQFile-method Man page
import,GMTFile-method Man page
import,GMXFile-method Man page
import,GRPFile-method Man page
import,JSONFile-method Man page
import,LinesFile-method Man page
import,MTXFile-method Man page
import,PZFXFile-method Man page
import,RDSFile-method Man page
import,RDataFile-method Man page
import,RioFile-method Man page
import,RtracklayerFile-method Man page
import,YAMLFile-method Man page
import,character-method Man page
loadData Man page Source code
loadDataAsName Man page Source code
loadRemoteData Man page Source code
localOrRemoteFile Man page Source code
makeNames Man page
matchRownameColumn Man page
matchRownameColumn,DataFrame-method Man page
matchRownameColumn,data.frame-method Man page
md5 Man page Source code
metadata Man page
metadata2 Man page
metadata2,ANY,character-method Man page
metadata2,Annotated,character-method Man page
metadata2<- Man page
metadata2<-,ANY,character-method Man page
metadata2<-,Annotated,character-method Man page
metadata<- Man page
naStrings Man page
pasteURL Man page
pipette Man page
pipette-package Man page
pipetteTestsURL Man page
rbindlist Man page
reexports Man page
removeNA Man page
removeNA,DataFrame-method Man page
removeNA,Matrix-method Man page
removeNA,atomic-method Man page
removeNA,data.frame-method Man page
removeNA,matrix-method Man page
rownames_to_column Man page
sanitizeColData Man page Source code
sanitizeNA Man page
sanitizeNA,DataFrame-method Man page
sanitizeNA,atomic-method Man page
sanitizeNA,character-method Man page
sanitizeNA,data.frame-method Man page
sanitizeNA,factor-method Man page
sanitizePercent Man page
sanitizePercent,atomic-method Man page
sanitizePercent,character-method Man page
sanitizeRowData Man page Source code
sanitizeRowRanges Man page Source code
saveData Man page Source code
seqnames Man page
sha256 Man page Source code
sparseMatrix Man page
sparseMatrix-class Man page
tibble Man page
transmit Man page Source code
writeCounts Man page Source code
acidgenomics/pipette documentation built on Sept. 27, 2021, 9:10 a.m.