markdownTables: Markdown tables

In acidgenomics/r-deseqanalysis: Acid Genomics DESeq2 Analysis Utilities

Markdown tables

Description

Markdown tables

Usage

markdownTables(object, ...)

## S4 method for signature 'DFrameList'
markdownTables(object, contrastName = NULL, n = 10L)

## S4 method for signature 'DESeqAnalysis'
markdownTables(object, i, n = 10L)

## S4 method for signature 'DESeqResults'
markdownTables(object, contrastName = NULL, n = 10L)

Arguments

object	Object.
contrastName	character(1) or NULL. Contrast name.
n	integer(1). Number of genes (per direction) to report.
i	Indices specifying elements to extract or replace. Indices are numeric or character vectors, empty (missing), or NULL. For more information: help(topic = "Extract", package = "base")
...	Additional arguments.

Value

kable. Markdown tables.

Note

Updated 2022-05-24.

Examples

data(deseq)

## DESeqAnalysis ====
markdownTables(deseq, i = 1L, n = 5L)

## DESeqResults 'resultsTables()' return ====
res <- results(deseq, i = 1L)
resTbl <- resultsTables(res)
markdownTables(resTbl, n = 5L)

acidgenomics/r-deseqanalysis documentation built on March 30, 2024, 12:08 p.m.