calc_r_camostat_stages: calculates r for the TEIV model with Erlang-distributed...
In ada-w-yan/deltaomicron1: Fit model to Delta and Omicron growth curves with and without Camostat
View source: R/camostat_model_sum_stats.R
calc_r_camostat_stages R Documentation
calculates r for the TEIV model with Erlang-distributed latent and infectious periods, and different cell types
Description
calculates r for the TEIV model with Erlang-distributed latent and infectious periods, and different cell types
Usage
calc_r_camostat_stages(params, warn_if_neg = FALSE)
Arguments
params
a list or named numeric vector with the parameter values for
beta: infectivity in inverse units of V (in dT/dt)
T_0: initial number of target cells in units of T
p: production rate of infectious virus from cells
c_inf: decay rate of infectious virus
k1: rate from latent to infectious
delta: decay rate of infectious cells
n_L: shape parameter for distribution of latent period
n_I: shape parameter for distribution of infectious period
beta_inf: infectivity in inverse units of T (in dV/dt)
if loss of virus due to enry into target cells is ignored, beta_inf = 0
Value
r: numeric vector of length 1
ada-w-yan/deltaomicron1 documentation built on June 24, 2022, 5:41 a.m.
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View source: R/camostat_model_sum_stats.R
| calc_r_camostat_stages | R Documentation |
calculates r for the TEIV model with Erlang-distributed latent and infectious periods, and different cell types
Description
calculates r for the TEIV model with Erlang-distributed latent and infectious periods, and different cell types
Usage
calc_r_camostat_stages(params, warn_if_neg = FALSE)
Arguments
params |
a list or named numeric vector with the parameter values for beta: infectivity in inverse units of V (in dT/dt) T_0: initial number of target cells in units of T p: production rate of infectious virus from cells c_inf: decay rate of infectious virus k1: rate from latent to infectious delta: decay rate of infectious cells n_L: shape parameter for distribution of latent period n_I: shape parameter for distribution of infectious period beta_inf: infectivity in inverse units of T (in dV/dt) if loss of virus due to enry into target cells is ignored, beta_inf = 0 |
Value
r: numeric vector of length 1
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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