gen_default_mcmcPars: generate default MCMC parameters

In ada-w-yan/deltaomicron1: Fit model to Delta and Omicron growth curves with and without Camostat

generate default MCMC parameters

Description

gen_default_mcmcPars supplies some default MCMC parameters.

Usage

gen_default_mcmcPars(
  iterations = 10000,
  popt = 0.44,
  opt_freq = 1000,
  thin = 1,
  adaptive_period = 5000,
  save_block = 100
)

Arguments

iterations	numeric vector of length 1: number of iterations for which to run MCMC (excluding adaptive period)
popt:	numeric vector of length 1: optimum acceptance ratio for adapting step size
opt_freq:	numeric vector of length 1: adjust step size per this many number of iterations during adaptive period
thin:	numeric vector of length 1: save state of chain and parameter values to file every this many iterations
adaptive_period:	numeric vector of length 1: number of iterations for which to adapt MCMC
save_block:	numeric vector of length 1: number of iterations to hold in memory

Details

All arguments are optional (to overwrite defaults)

Value

a named vector with the above elements

ada-w-yan/deltaomicron1 documentation built on June 24, 2022, 5:41 a.m.