Files in ada-w-yan/reassortment

Modelling Evolution of Strain Mixtures Including Reassortment

R/cluster_tools.R R/general_functions.R R/plotting.R R/reassortment_model.R README.md man/apply_named_args.Rd man/enumerate_popn.Rd man/get_hash.Rd man/get_user_options.Rd man/get_vars_from_list_with_check.Rd man/lapply_w_name.Rd man/list_vars_from_environment.Rd man/make_and_package_segments.Rd man/make_mutation_matrix.Rd man/make_results_folder.Rd man/mutate_popn_wrapper.Rd man/normalise.Rd man/num2str.Rd man/parLapply_wrapper.Rd man/plot_multirun_segments.Rd man/plot_multirun_strains.Rd man/plot_segments.Rd man/plot_strains.Rd man/probabilistic_round.Rd man/reassort_popn.Rd man/round_preserve_sum.Rd man/run_default_pars.Rd man/run_mutation_model_no_coinfection.Rd man/segments_to_strain.Rd man/sensitivity_plot.Rd man/setup_cluster.Rd man/simulate_evolution.Rd man/sum_strains.Rd man/vnapply.Rd scripts/analyses.R scripts/bars.R scripts/change_fitness_MOI.R scripts/example.R scripts/options_paper_panels.R scripts/paper_panels.R scripts/sensitivity.R scripts/timing.R scripts/wrapper.R vignettes/main.Rmd