run_mutation_model_no_coinfection: Simulate evolution of mixture by mutation, with no...

In ada-w-yan/reassortment: Modelling Evolution of Strain Mixtures Including Reassortment

Description

Simulate evolution of mixture by mutation, with no co-infection

Usage

run_mutation_model_no_coinfection(iv, fitness, burst_size, pop_size,
  generations, mutation_prob)

Arguments

iv	numeric vector of length n_strains = 4. Initial proportions of [mt, mt], [mt, wt], [wt, mt], [wt, wt].
fitness	numeric vector of length n_strains = 4. Relative fitness of the four strains.
burst_size	numeric vector of length 1. Burst size from a cell infected with one virion with fitness 1.
pop_size	numeric vector of length 1. Initial number of virions.
generations	numeric vector of length 1. Number of generations for which to run model.
mutation_prob	probability of mutation for each new virion. Assume same for pb1 and pa.

Value

matrix of dim c(generations, n_strains). Proportion of virions of each strain for each generation.

ada-w-yan/reassortment documentation built on April 10, 2021, 12:03 a.m.