test_that("Values are as expected", {
wth <- epicrop:::wth
bs <- predict_brown_spot(wth, emergence = "2000-07-01")
expect_named(
bs,
c(
"simday",
"dates",
"sites",
"latent",
"infectious",
"removed",
"senesced",
"rateinf",
"rtransfer",
"rgrowth",
"rsenesced",
"diseased",
"intensity",
"AUDPC",
"lat",
"lon"
)
)
expect_is(bs, c("data.table", "data.frame"))
expect_equal(nrow(bs), 120)
expect_equal(bs[[1, "sites"]], 600)
expect_equal(bs[[120, "sites"]], 84949.3, tolerance = 0.1)
expect_equal(bs[[1, "latent"]], 0, tolerance = 0.1)
expect_equal(bs[[120, "latent"]], 1670, tolerance = 0.1)
expect_equal(bs[[1, "infectious"]], 0, tolerance = 0.1)
expect_equal(bs[[120, "infectious"]], 1183, tolerance = 0.1)
expect_equal(bs[[1, "removed"]], 0, tolerance = 0.1)
expect_equal(bs[[120, "removed"]], 97.8, tolerance = 0.1)
expect_equal(bs[[1, "senesced"]], 0, tolerance = 0.1)
expect_equal(bs[[120, "senesced"]], 55963.4, tolerance = 0.1)
expect_equal(bs[[1, "rateinf"]], 0, tolerance = 0.1)
expect_equal(bs[[120, "rateinf"]], 679, tolerance = 0.1)
expect_equal(bs[[1, "rtransfer"]], 0, tolerance = 0.1)
expect_equal(bs[[120, "rtransfer"]], 189, tolerance = 0.1)
expect_equal(bs[[1, "rgrowth"]], 59.6, tolerance = 0.1)
expect_equal(bs[[120, "rgrowth"]], 877.2, tolerance = 0.1)
expect_equal(bs[[1, "rsenesced"]], 6, tolerance = 0.1)
expect_equal(bs[[120, "rsenesced"]], 887.3, tolerance = 0.1)
expect_equal(bs[[1, "diseased"]], 0, tolerance = 0.1)
expect_equal(bs[[120, "diseased"]], 2951, tolerance = 0.1)
expect_equal(bs[[1, "intensity"]], 0, tolerance = 0.1)
expect_equal(bs[[120, "intensity"]], 0.03, tolerance = 0.01)
expect_equal(bs[[1, "lat"]], 14.67741, tolerance = 0.00001)
expect_equal(bs[[1, "lon"]], 121.2556, tolerance = 0.0001)
})
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