test_that("Values are as expected", {
wth <- epicrop:::wth
sb <- predict_sheath_blight(wth, emergence = "2000-07-01")
expect_named(
sb,
c(
"simday",
"dates",
"sites",
"latent",
"infectious",
"removed",
"senesced",
"rateinf",
"rtransfer",
"rgrowth",
"rsenesced",
"diseased",
"intensity",
"AUDPC",
"lat",
"lon"
)
)
expect_is(sb, c("data.table", "data.frame"))
expect_equal(nrow(sb), 120)
expect_equal(sb[[1, "sites"]], 25)
expect_equal(sb[[120, "sites"]], 165.1, tolerance = 0.1)
expect_equal(sb[[1, "latent"]], 0, tolerance = 0.1)
expect_equal(sb[[120, "latent"]], 14.3, tolerance = 0.1)
expect_equal(sb[[1, "infectious"]], 0, tolerance = 0.1)
expect_equal(sb[[120, "infectious"]], 603.1, tolerance = 0.1)
expect_equal(sb[[1, "removed"]], 0, tolerance = 0.1)
expect_equal(sb[[120, "removed"]], 0, tolerance = 0.1)
expect_equal(sb[[1, "senesced"]], 0, tolerance = 0.1)
expect_equal(sb[[120, "senesced"]], 281.8, tolerance = 0.1)
expect_equal(sb[[1, "rateinf"]], 0, tolerance = 0.1)
expect_equal(sb[[120, "rateinf"]], 4.14, tolerance = 0.01)
expect_equal(sb[[1, "rtransfer"]], 0, tolerance = 0.1)
expect_equal(sb[[120, "rtransfer"]], 0, tolerance = 0.1)
expect_equal(sb[[1, "rgrowth"]], 4.8, tolerance = 0.1)
expect_equal(sb[[120, "rgrowth"]], 0.8, tolerance = 0.1)
expect_equal(sb[[1, "rsenesced"]], 0.1, tolerance = 0.1)
expect_equal(sb[[120, "rsenesced"]], 0.8, tolerance = 0.1)
expect_equal(sb[[1, "diseased"]], 0, tolerance = 0.1)
expect_equal(sb[[120, "diseased"]], 614.8, tolerance = 0.1)
expect_equal(sb[[1, "intensity"]], 0, tolerance = 0.1)
expect_equal(sb[[120, "intensity"]], 0.7, tolerance = 0.1)
expect_equal(sb[[1, "lat"]], 14.67741, tolerance = 0.00001)
expect_equal(sb[[1, "lon"]], 121.2556, tolerance = 0.0001)
})
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.