bgstats: Statistics calculated from a biogeographic partitioning
In adamkocsis/obigeo: Occurrence-based biogeography

bgstats

R Documentation

Statistics calculated from a biogeographic partitioning

This function will output various statistics of biogeographic partitioning files

bgstats(
  bg,
  cell,
  bin = NULL,
  bu = "grouping",
  mjc = 3,
  bb = TRUE,
  noNAStart = FALSE,
  propsing = FALSE
)

`bg`	Output of the `bgpart` function, with `tracing=TRUE`.
`cell`	(`character`) Variable name of the spatial cells.
`bin`	(`character`) Variable name of the time slice identifier.
`bu`	(`character`) Variable name of grouping (biogeographic units).
`mjc`	(`numeric`) Minimum number of jointly sampled cells betwen a pair of time slices. For slicewise results, this can be set to `NULL`, which will not return patterns of jointly sampled cells.
`bb`	`logical` Should by-bioregion turnover be calculated (requires the divDyn package).
`noNAStart`	(`logical`) Same as divDyn.
`propSing`	(`logical`) Should single-interval regions be counted in the emergence/disintegration proportions? Default to `FALSE` as in Kocsis et al. 2018, Proceedings B.