add_scale_pars: Add scaling parameters to par_tab

In adamkucharski/serosolver: Inference Framework for Serological Data

Add scaling parameters to par_tab

Description

Adds entries to par_tab to stratify parameters by requested stratification levels. antibody_data and timevarying_demographics are used to find how many levels of each stratification have been requested

Usage

add_scale_pars(
  par_tab,
  antibody_data,
  timevarying_demographics = NULL,
  scale_par_lower = -25,
  scale_par_upper = 25
)

Arguments

par_tab	the parameter table, including a column called stratification which is NA if no stratification is requested, for with a character value matching an entry in antibody_data or timevarying_demographics
antibody_data	the antibody data data frame, see example_antibody_data. If NULL, then uses timevarying_demographics
timevarying_demographics	a data frame of timevarying demographics, with columns individual, time and any stratification variables. If NULL, then uses antibody_data
scale_par_lower	the lower bound of any used scale parameters
scale_par_upper	the upper bound of any used scale parameters

Value

the updated par_tab

adamkucharski/serosolver documentation built on June 12, 2025, 9:08 a.m.