API for adamkucharski/serosolver
Inference framework for serological data

Global functions
add_measurement_shifts Man page Source code
add_noise Man page Source code
bb_mean Man page Source code
bb_var Man page Source code
calc_a Source code
calc_b Source code
calc_phi_probs Man page Source code
calc_phi_probs_indiv Man page Source code
calc_phi_probs_indiv_brute Man page Source code
calc_phi_probs_monthly Man page Source code
calculate_infection_history_statistics Man page Source code
calibrate_temperatures Man page Source code
check_attack_rates Man page Source code
check_data Man page Source code
check_par_tab Man page Source code
check_proposals Man page Source code
create_age_mask Man page Source code
create_cross_reactivity_vector Man page Source code
create_posterior_func Man page Source code
create_posterior_func_fast Man page Source code
create_prior_mu Man page Source code
create_prob_shifts Man page Source code
create_run_MCMC_single_iter_fn_fast Source code
create_strain_mask Man page Source code
db Man page Source code
dbb Man page Source code
dbb_prior Man page Source code
density_beta_binom Man page Source code
describe_proposals Source code
estimate_mode Man page Source code
euc_distance Source code
expand_summary_infChain Man page Source code
expand_summary_inf_chain Man page Source code
find_bb_2 Man page Source code
find_beta_parameters Man page Source code
find_prior_alpha_beta Man page Source code
fit_beta_prior Man page Source code
fit_normal_prior Man page Source code
fromUnitScale Man page Source code
gen_spline_y Man page Source code
generate_alpha_beta_prior_mode Man page Source code
generate_antigenic_map Man page Source code
generate_antigenic_map_flexible Man page Source code
generate_ar_annual Man page Source code
generate_beta_prior_mean Man page Source code
generate_cumulative_inf_plots Man page Source code
generate_phis Man page Source code
generate_quantiles Man page Source code
get_best_pars Man page Source code
get_index_pars Man page Source code
get_n_alive Man page Source code
get_n_alive_location Man page Source code
get_titre_predictions Man page Source code
get_total_number_infections Man page Source code
hist_rbb Man page Source code
inf_hist_prob_phi Man page Source code
inf_hist_prop_cpp Man page Source code
inf_hist_swap Man page Source code
inf_hist_swap_phi Man page Source code
inf_mat_prior Man page Source code
inf_mat_prior_cpp Man page Source code
inf_mat_prior_cpp_vector Man page Source code
inf_mat_prior_total_cpp Man page Source code
infection_history_betabinom Man page Source code
infection_history_betabinom_group Man page Source code
infection_history_prior Man page Source code
infection_history_proposal Man page Source code
infection_history_proposal_gibbs Man page Source code
infection_history_proposal_gibbs_R Man page Source code
infection_history_proposal_gibbs_fast Man page Source code
infection_history_symmetric Man page Source code
infection_model_indiv Man page Source code
likelihood_data_individual Man page Source code
likelihood_func_fast Man page Source code
likelihood_titre_basic Man page Source code
load_antigenic_map_file Man page Source code
load_infection_chains Man page Source code
load_mcmc_chains Man page Source code
load_start_tab Man page Source code
load_theta_chains Man page Source code
load_titre_dat Man page Source code
logistic_transform Source code
logit_transform Source code
melt_antigenic_coords Man page Source code
mvr_proposal Man page Source code
pad_alphas_and_betas Man page Source code
pad_inf_chain Man page Source code
parallel_tempering Man page Source code
pbb Man page Source code
phi_proposal Man page Source code
plot_2d_density Source code
plot_attack_rate_residuals Man page Source code
plot_attack_rates Man page Source code
plot_attack_rates_monthly Man page Source code
plot_data Man page Source code
plot_infection_histories Man page Source code
plot_infection_history_chains_indiv Man page Source code
plot_infection_history_chains_time Man page Source code
plot_number_infections Man page Source code
plot_posteriors_infhist Man page Source code
plot_posteriors_theta Man page Source code
plot_samples_distances Man page Source code
plot_total_number_infections Man page Source code
prob_mus Man page Source code
prob_shifts Man page Source code
protect Man page Source code
qbb Man page Source code
r_likelihood Man page Source code
rbb Man page Source code
rm_scale Man page Source code
row.match Source code
run_MCMC Man page Source code
run_MCMC_pt_fast Man page Source code
save_infection_history_to_disk Man page Source code
scaletuning Man page Source code
setup_infection_histories_new Man page Source code
setup_infection_histories_new_2 Man page Source code
setup_infection_histories_old Man page Source code
setup_infection_histories_total Man page Source code
setup_titredat_for_posterior_func Man page Source code
simulate_ars_buckets Source code
simulate_ars_spline Source code
simulate_attack_rates Man page Source code
simulate_cross_sectional Man page Source code
simulate_data Man page Source code
simulate_group Man page Source code
simulate_individual Man page Source code
simulate_infection_histories Man page Source code
solve_model_individual Man page Source code
subset_nullable_vector Man page Source code
sum_buckets Man page Source code
sum_likelihoods Man page Source code
titre_data_fast Man page Source code
titre_data_group Man page Source code
titre_data_individual Man page Source code
titre_dependent_boosting_plot Man page Source code
to.pdf Man page Source code
to.png Man page Source code
to.svg Man page Source code
toUnitScale Man page Source code
univ_proposal Man page Source code
wane_function Man page Source code
adamkucharski/serosolver documentation built on April 12, 2019, 2:47 p.m.