get_n_alive_group: Get number alive by location

In adamkucharski/serosolver: Inference Framework for Serological Data

Get number alive by location

Description

Given the antibody_data data frame with entries for location, calculates the number that are alive (alive to be infected, that is) for each time in times by location

Usage

get_n_alive_group(antibody_data, times, melt_data = FALSE)

Arguments

antibody_data	the data frame of antibody data. See example_antibody_data
times	the vector of times to calculate number alive for
melt_data	if TRUE, returns a melted data frame. Returns a wide matrix otherwise.

Value

a matrix giving the number alive in each time point in each location

See Also

Other get_summary: get_DOBs(), get_n_alive()

Examples

data(example_antibody_data)
data(example_antigenic_map)
times <- unique(example_antigenic_map$inf_times)
get_n_alive_group(example_antibody_data, times)

adamkucharski/serosolver documentation built on April 13, 2024, 10:24 a.m.