variantsToGRanges: Convert variants to GRanges.
In adamstruck/ga4ghr: R Client for GA4GH API

Description Usage Arguments Value See Also Examples

Note that the Global Alliance for Genomics and Health API uses a 0-based coordinate system. For more detail, please see GA4GH discussions such as the following:

1	variantsToGRanges(variants, oneBasedCoord = TRUE, slStyle = "UCSC")

`variants`	A list of R objects corresponding to the JSON objects returned by the GA4GH Variants API.
`oneBasedCoord`	Convert genomic positions to 1-based coordinates.
`slStyle`	The style for seqnames (chrN or N or...). Default is UCSC.

GRanges

Other variants converter functions: variantsToVRanges

variants1 <- searchVariants(converter = variantsToGRanges)
summary(variants1)
variants2 <- variantsToGRanges(searchVariants())
print(identical(variants1, variants2))