sendRequest: Get one page of search results for a particular endpoint from...

In adamstruck/ga4ghr: R Client for GA4GH API

Description

In general, use higher level methods such as getReads and getVariants instead.

Usage

sendRequest(base_url, endpoint, method, body, query_fields, pageToken)

Arguments

base_url	the base URL of the GA4GH server to which requests will be sent to.
endpoint	a endpoint such as reads, variants, variantSets, etc...
method	which method (GET/POST) should be used in the request to the API?
body	The body of the message to GET/POST to the endpoint.
query_fields	The fields to be returned in the search response.
pageToken	The page token. This can be NULL for the first page.

Value

The raw response converted from JSON to an R object.

Examples

body <- list(readGroupSetIds=list("CMvnhpKTFhDnk4_9zcKO3_YB"),
             referenceName="22",
             start=16051400, end=16051500, pageToken=NULL)
reads <- getSearchPage("reads", body, NULL, NULL)
summary(reads)

adamstruck/ga4ghr documentation built on May 10, 2019, 5:51 a.m.