get_residue_position: Extract amino acid residue position from HGVS protein...

In adamwaring/ClusterBurden: Rare variant association utilising burden and positional information.

Description

This function makes most sense for mutations that impact a single amino acid such as the missense mutation p.Trp26Cys. For indels and duplications, where many amino acid positions are impacted, the first amino acid, i.e. the lowest index, is taken.

Usage

get_residue_position(hgvs)

Arguments

hgvs	vector of variant protein consequences in HGVS format e.g. p.Trp26Cys or p.A54Y.

Value

Returns a numeric vector of amino acid positions

Author(s)

Adam Waring - [e-mail]

Examples

get_residue_position("p.Trp26Cys")

adamwaring/ClusterBurden documentation built on July 29, 2020, 9:50 p.m.