readAllArcasHLAGenotypefromDir: Extract all HLA typing from all genotypes json files present...

In adeschen/arcasHLATools: Tools to ease the extraction and manipulation of HLA typing produced by arcasHLA software

Description

TODO

Usage

readAllArcasHLAGenotypefromDir(directory_path, prefix = "",
  suffix = ".genotype.json", recursive = FALSE)

Arguments

directory_path	a character string corresponding to the name of the directory containing the arcasHLA genotype files.
prefix	a character string specifying the prefix of the files to load. It is usefull when only a subsection of the files need to be loaded. Default = "".
suffix	a character string specifying the suffix of the files to load. It is usefull when only a subsection of the files need to be loaded. Default = ".genotype.json".
recursive	a logical indicating if the listing should recurse into subdirectories. Default = FALSE.

Value

a TODO

Author(s)

Astrid Deschenes

Examples

## Directory containing arcasHLA genotype files
directory <- system.file("extdata/arcasHLAFiles", package = "arcasHLATools")

## Reading all genotype files in the directory
readAllArcasHLAGenotypefromDir(directory)

adeschen/arcasHLATools documentation built on June 7, 2019, 5:10 a.m.