Files in adeschen/methylInheritance
Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc.yml
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/methylInheritance.R
R/methylInheritanceInternalMethods.R
R/methylInheritanceMethods.R
R/print.methylInheritanceAllResults.R
README.md
data/demoForTransgenerationalAnalysis.RData
data/methylInheritanceResults.RData
data/samplesForTransgenerationalAnalysis.RData
inst/CITATION
inst/NEWS
inst/extdata/TEST/SITES/SITES_observed_results.RDS
inst/extdata/TEST/SITES/SITES_permutation_1.RDS
inst/extdata/TEST/SITES/SITES_permutation_2.RDS
inst/extdata/TEST/SITES/SITES_permutation_3.RDS
inst/extdata/TEST/TILES/TILES_observed_results.RDS
inst/extdata/TEST/TILES/TILES_permutation_1.RDS
inst/extdata/TEST/TILES/TILES_permutation_2.RDS
inst/extdata/TEST/TILES/TILES_permutation_3.RDS
inst/extdata/TEST_01/observations/SITES/SITES_observed_results.RDS
inst/extdata/TEST_01/permutations/SITES/SITES_permutation_1.RDS
inst/extdata/TEST_01/permutations/SITES/SITES_permutation_10.RDS
inst/extdata/TEST_01/permutations/SITES/SITES_permutation_2.RDS
inst/extdata/TEST_01/permutations/SITES/SITES_permutation_3.RDS
inst/extdata/TEST_01/permutations/SITES/SITES_permutation_4.RDS
inst/extdata/TEST_01/permutations/SITES/SITES_permutation_5.RDS
inst/extdata/TEST_01/permutations/SITES/SITES_permutation_6.RDS
inst/extdata/TEST_01/permutations/SITES/SITES_permutation_7.RDS
inst/extdata/TEST_01/permutations/SITES/SITES_permutation_8.RDS
inst/extdata/TEST_01/permutations/SITES/SITES_permutation_9.RDS
inst/extdata/methylObj_001.RDS
inst/extdata/permutationResultsForSites.RDS
inst/extdata/resultsForTransgenerationalAnalysis.RDS
inst/unitTests/test_methylInheritanceInternalMethods.R
inst/unitTests/test_methylInheritanceMethods.R
inst/unitTests/test_print_methylInheritanceAllResults.R
inst/unitTests/test_validateRunPermutationUsingRDS.R
man/calculateSignificantLevel.Rd
man/createDataStructure.Rd
man/createOutputDir.Rd
man/demoForTransgenerationalAnalysis.Rd
man/extractInfo.Rd
man/formatInputMethylData.Rd
man/getGRangesFromMethylDiff.Rd
man/interGeneration.Rd
man/isInterGenerationResults.Rd
man/loadAllRDSResults.Rd
man/loadConvergenceData.Rd
man/mergePermutationAndObservation.Rd
man/methylInheritance-package.Rd
man/methylInheritanceAllResults.Rd
man/methylInheritanceResults.Rd
man/plotConvergenceGraph.Rd
man/plotGraph.Rd
man/readInterGenerationResults.Rd
man/runObservation.Rd
man/runOnePermutationOnAllGenerations.Rd
man/runPermutation.Rd
man/samplesForTransgenerationalAnalysis.Rd
man/saveInterGenerationResults.Rd
man/validateExtractInfo.Rd
man/validateLoadConvergenceData.Rd
man/validateMergePermutationAndObservation.Rd
man/validateRunObservation.Rd
man/validateRunPermutation.Rd
methylInheritance.Rproj
tests/runTests.R
vignettes/biblio.bibtex
vignettes/demo/F1_case_01.txt
vignettes/demo/F1_control_01.txt
vignettes/demo/F2_case_01.txt
vignettes/demo/F2_control_01.txt
vignettes/demo_01/SITES/SITES_observed_results.RDS
vignettes/demo_02/SITES/SITES_permutation_1.RDS
vignettes/demo_02/SITES/SITES_permutation_2.RDS
vignettes/methylInheritance.Rmd
vignettes/test_restart/TILES/TILES_observed_results.RDS
vignettes/test_restart/TILES/TILES_permutation_1.RDS
vignettes/test_restart/TILES/TILES_permutation_2.RDS
