createOutputDir: Create directories that will contained the results of the...

In adeschen/methylInheritance: Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect

Description

Create directories that will contained the results of the permutations in RDS format.

Usage

createOutputDir(
  outputDir,
  doingSites = TRUE,
  doingTiles = FALSE,
  saveInfoByGeneration
)

Arguments

outputDir	a string of character, the name of the main directory to be created.
doingSites	a logical, a directory consecrated to contain the results of the permutation analysis for sites is created when doingSites = TRUE. Default: TRUE.
doingTiles	a logical, a directory consecrated to contain the results of the permutation analysis for tiles is created when doingTiles = TRUE. Default: FALSE.
saveInfoByGeneration	a logical, when TRUE, the information about differentially methylated sites and tiles for each generation is saved in a RDS file. The information is saved in a different file for each permutation.

Value

0 when all directories are created without problem.

Author(s)

Astrid Deschenes

Examples

## Create an output directory for SITES only
methylInheritance:::createOutputDir(outputDir = "testSites",
    doingSites = TRUE, doingTiles = FALSE, saveInfoByGeneration = TRUE)

adeschen/methylInheritance documentation built on April 21, 2021, 9:45 a.m.