reports/README.md

In adnaniazi/krauseNiazi2019Analyses: Reproducible analysis for tailfindr paper

R Markdown files

This direcotry contains all the R Markdown files for generating figure used in the tailfindr manuscript.

When you run drake::r_make(), it will first download the data, consolidate the data, and then knit the R Markdown files – present in this directory – using the consolidated data. The html output of the R Markdown files is stored here with the same name as the R Markdown file.

Modifiying R Markdown file to include custom analyses

After you have successfully run drake::r_make(), you can change these R Markdown files to inlcude custom analyses. To render the modified R Markdown file, either run drake::r_make() again, which will automatically knit the modified R Markdown file(s), or just use the ‘knit’ option in R Studio.

What is what

1. krause_niazi_et_al_dna_analysis.Rmd

Contains all the analyses done on our DNA datasets.

2. krause_niazi_et_al_rna_analysis.Rmd

Contains all the analyses done on our RNA datasets.

3. workman_et_al_rna_analysis.Rmd

Contains all the analyses done on Workman et al.’s RNA datasets.

adnaniazi/krauseNiazi2019Analyses documentation built on June 9, 2019, 7:22 p.m.